- BBClist - maillist.psb.ugent.be

Bioinformatician vacancy at Leiden University Medical Center
by Leon Mei 04 Apr '14

04 Apr '14

Dear colleagues, We have one bioinformatician vacancy (BSc/MSc level) at the department of Clinical genetics in Leiden University Medical Center. Please feel free to apply or forward the link to those who might be interested in this position. Thanks! https://www.lumc.nl/home/0005/werken-bij-het-lumc/23583/80611011354221/1403… Best regards, Leon

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Fwd: Call for abstracts: Regulatory Genomics Special Interest Group (RegGenSIG)
by Stein Aerts 02 Apr '14

02 Apr '14

FYI: http://light.ece.ohio.edu/~reggen/2014/ Best regards, Stein Regulatory Genomics Special Interest Group (RegGenSIG) Special Interest Group (SIG) at ISMB 2014 July 12, 2014, Boston, Massachusetts SIG Hours: 8:30 a.m - 6:00 p.m. Regulatory genomics involves the study of the genomic 'control system,' which determines how, when and where to activate the 'blueprint' encoded in the genome. Regulatory genomics is the topic of much research activity worldwide. Since computational methods are important in the study of gene regulation, the RegGenSIG meeting focuses on bioinformatics for regulatory genomics. An important goal of the meeting is to foster a collaborative community wherein scientists convene to solve difficult research problems in all areas of computational regulatory genomics. RegGenSIG will include presentations and posters that cover the broad spectrum of topics important to regulatory genomics research. The goal is to bring together experts in experimental methods and computational methods to consider sequence-based reconstruction of regulatory networks and prediction of gene expression. Topics to be addressed in the SIG include the following: inference of gene regulatory networks; utilization of information pertaining to epigenetics, chromatin structure, and histone modifications; determination of the roles of regulatory RNAs; prediction of transcriptional regulation from RNA-seq data and ChIP-seq data; pattern discovery in sequences; and sequence based modeling of gene expression. CALL FOR EXTENDED ABSTRACTS To make an oral presentation at RegGenSIG, extended abstracts should be submitted by April 27, 2014 to sinhas(a)illinois.edu, including "RegGen Abstract Oral" in the subject line. An abstract should be a maximum of 3 pages excluding bibliography. Authors will be notified by May 8, 2014. CALL FOR POSTERS For poster presentations, authors should submit a 250 word abstract no later than May 18, 2014 to sinhas(a)illinois.edu, including "RegGen Abstract Poster" in the subject line. Authors will be notified no later than May 25, 2014. KEY DATES April 20, 2014 Due date for extended abstracts (2-3 pages) for oral presentations May 1, 2014 Author notification for oral presentations May 18, 2014 Due date for short abstracts (250 words) for poster presentations May 25, 2014 Author notification for poster presentations June 6, 2014 Early registration cut-off date July 12, 2014 RegGenSIG meeting Program Chairs: Jason Ernst, UCLA, USA, jason.ernst(a)ucla.edu Saurabh Sinha, University of Illinois, USA, sinhas(a)illinois.edu Stein Aerts, University of Leuven, Belgium, stein.aerts(a)med.kuleuven.be Morgane Thomas-Chollier, Ecole Normale Superieure, France, mthomas(a)biologie.ens.fr General Chairs: Finn Drabløs, Norwegian University of Science and Technology, Norway, finn.drablos(a)ntnu.no Lonnie R. Welch, Ohio University, USA, welch(a)ohio.edu SIG Advisory Committee: Tim Bailey, University of Queensland, Australia Harmen Bussemaker, Columbia University Andrea Califano, Columbia University Julio Collado-Vides, National Autonomous University of Mexico Laura Elnitski, National Human Genome Research Institute, USA Ana Teresa Freitas, Technical University of Lisbon, Portugal Roderic Guigo, Centre for Genomic Regulation, Spain Alexander Hartemink, Duke University Manolis Kellis, MIT, USA (pending) Kathleen Marchal, Professor University of Ghent and K. U. Leuven, Belgium William Noble, University of Washington (tentative) Isidore Rigoutsos, Thomas Jefferson University, USA Sophie Schbath, Institut National de la RecherchÃ© Agronomique, France Gustavo Stolovitzky, IBM Gary Stormo, Washington University, USA Kai Tan, University of Iowa, USA Andrei Thomas-Tikhonenko, University of Pennsylvania Esko Ukkonen, University of Helsinki, Finland Martin Vingron, Max Planck Institute for Molecular Genetics, Germany Weixiong Zhang, Washington University, USA Igor Zwir, University of Granada

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BBC 2013 abstract submission through EasyChair
by BBC2013 01 Apr '14

01 Apr '14

BBC2013 – BeNeLux Bioinformatics Conference 2013 Date: December 9 & 10, 2013 Venue: Salle Dupréel (Université Libre de Bruxelles), Brussels, Belgium Website: http://bbc2013.ibsquare.be Abstract submission deadline: October 1, 2013 Early registration deadline: November 1, 2013 Dear Colleagues, The 8th edition of the BeNeLux Bioinformatics Conference will take place in Brussels on the 9th and 10th of December 2013. The theme of this year's conference is: "Bioinformatics at all scales of life". Since 2005, the BeNeLux Bioinformatics Conference gives bioinformaticians, from the BeNeLux and beyond, the opportunity to discuss their results and build new collaborations, in a relaxed and friendly atmosphere. This year's edition will be enhanced by the presence of three distinguished keynote speakers: Alfonso Valencia (Spanish National Cancer Research Center, http://bit.ly/14SAITQ) Anna Tramontano (University of Rome "La Sapienza", http://www.biocomputing.it) and Jim Haseloff (Plant Synthetic Biology, University of Cambridge, http://www.haseloff-lab.org) Call for abstracts We invite you to submit an abstract for an oral presentation (20 available slots: 6 long, 14 short) and/or a poster presentation. Contributions from all fields of bioinformatics are welcome and encouraged. We have provided a template to use for submission through the EasyChair system: https://www.easychair.org/conferences/?conf=bbc2013 . Details on the submission procedure can be found at http://bbc2013.ibsquare.be/content/call-abstracts . We hope to see you all in Brussels! -- The BBC 2013 organising committee BeNeLux Bioinformatics Conference 2013 December 9-10, 2013 (Brussels)

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Marie Curie Individual Fellowship - Systems Biology Analysis Of Responses To Vaccination
by Robert Van den Berg 01 Apr '14

01 Apr '14

Hi all, We're looking for a postdoc to study omics data collected in our clinical trials to better understand the development of the immune response against our vaccines in time. Please follow the link for more information: https://careers.peopleclick.com/careerscp/client_gsk/external1931/jobDetail…<https://careers.peopleclick.com/careerscp/client_gsk/external1931/jobDetail…> Kind regards, Robert Robert van den Berg Senior Manager Vaccines Research GSK Biologicals GSK Rue de l’institut 89 B1330, Rixensart Belgium Email robert.x.van-den-berg(a)gsk.com<mailto:robert.x.van-den-berg@gsk.com> Tel +32 2 656 8395 gsk.com<http://www.gsk.com/> | Twitter<http://twitter.com/GSK> | YouTube<http://www.youtube.com/user/gskvision> | Facebook<http://www.facebook.com/glaxosmithkline> | Flickr<http://www.flickr.com/photos/glaxosmithkline> [cid:image001.png@01CF4DAF.A4B9CF90] Registered as GlaxoSmithKline Biologicals SA - Rue de l’Institut, 89 BE-1330 Rixensart – TVA BE 0440.872.918 RPM Nivelles. Deutsche Bank AG Bruxelles 826-0006444-59

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Looking for a Database administrator
by Annick Wilmotte 31 Mar '14

31 Mar '14

Met vriendelijke groet Daphné Vleeschouwer Personeelsdienst- Vacatures Instituut voor Tropische Geneeskunde Nationalestraat 155 2000 Antwerpen dvleeschouwer(a)itg.be <mailto:dvleeschouwer@itg.be> vacatures(a)itg.be Tel +32 (0)3 247.07.05 *P****/Please consider the environment before printing this e-mail/* Disclaimer <http://www.itg.be/disclaimer> _Directions to our location(s) <http://g.co/maps/ua89b>_

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SSTiC 2014: April 12, 5th registration deadline
by GRLMC 30 Mar '14

30 Mar '14

********************************************************************* 2014 TARRAGONA INTERNATIONAL SUMMER SCHOOL ON TRENDS IN COMPUTING SSTiC 2014 Tarragona, Spain July 7-11, 2014 Organized by Rovira i Virgili University http://grammars.grlmc.com/sstic2014/ ********************************************************************* --- April 12, 5th registration deadline --- ********************************************************************* AIM: SSTiC 2014 is the second edition in a series started in 2013. For the previous event, see http://grammars.grlmc.com/SSTiC2013/ SSTiC 2014 will be a research training event mainly addressed to PhD students and PhD holders in the first steps of their academic career. It intends to update them about the most recent developments in the diverse branches of computer science and its neighbouring areas. To that purpose, renowned scholars will lecture and will be available for interaction with the audience. SSTiC 2014 will cover the whole spectrum of computer science through 6 keynote lectures and 24 six-hour courses dealing with some of the most lively topics in the field. The organizers share the idea that outstanding speakers will really attract the brightest students. ADDRESSED TO: Graduate students from around the world. There are no formal pre-requisites in terms of the academic degree the attendee must hold. However, since there will be several levels among the courses, reference may be made to specific knowledge background in the description of some of them. SSTiC 2014 is also appropriate for more senior people who want to keep themselves updated on developments in their own field or in other branches of computer science. They will surely find it fruitful to listen and discuss with scholars who are main references in computing nowadays. REGIME: In addition to keynotes, 3 parallel sessions will be held during the whole event. Participants will be able to freely choose the courses they will be willing to attend as well as to move from one to another. VENUE: SSTiC 2014 will take place in Tarragona, located 90 kms. to the south of Barcelona. The venue will be: Campus Catalunya Universitat Rovira i Virgili Av. Catalunya, 35 43002 Tarragona KEYNOTE SPEAKERS: Larry S. Davis (U Maryland, College Park), A Historical Perspective of Computer Vision Models for Object Recognition and Scene Analysis David S. Johnson (Columbia U, New York), Open and Closed Problems in NP-Completeness George Karypis (U Minnesota, Twin Cities), Recommender Systems Past, Present, & Future Steffen Staab (U Koblenz), Explicit and Implicit Semantics: Two Sides of One Coin Philip Wadler (U Edinburgh), You and Your Research and The Elements of Style Ronald R. Yager (Iona C, New Rochelle), Social Modeling COURSES AND PROFESSORS: Divyakant Agrawal (U California, Santa Barbara), [intermediate] Scalable Data Management in Enterprise and Cloud Computing Infrastructures Pierre Baldi (U California, Irvine), [intermediate] Big Data Informatics Challenges and Opportunities in the Life Sciences Rajkumar Buyya (U Melbourne), [intermediate] Cloud Computing John M. Carroll (Pennsylvania State U, University Park), [introductory] Usability Engineering and Scenario-based Design Kwang-Ting (Tim) Cheng (U California, Santa Barbara), [introductory/intermediate] Smartphones: Hardware Platform, Software Development, and Emerging Apps Amr El Abbadi (U California, Santa Barbara), [introductory] The Distributed Foundations of Data Management in the Cloud Richard M. Fujimoto (Georgia Tech, Atlanta), [introductory] Parallel and Distributed Simulation Mark Guzdial (Georgia Tech, Atlanta), [introductory] Computing Education Research: What We Know about Learning and Teaching Computer Science David S. Johnson (Columbia U, New York), [introductory] The Traveling Salesman Problem in Theory and Practice George Karypis (U Minnesota, Twin Cities), [intermediate] Programming Models/Frameworks for Parallel & Distributed Computing Aggelos K. Katsaggelos (Northwestern U, Evanston), [intermediate] Optimization Techniques for Sparse/Low-rank Recovery Problems in Image Processing and Machine Learning Arie E. Kaufman (U Stony Brook), [intermediate/advanced] Visualization Carl Lagoze (U Michigan, Ann Arbor), [introductory] Curation of Big Data Dinesh Manocha (U North Carolina, Chapel Hill), [introductory/intermediate] Robot Motion Planning Bijan Parsia (U Manchester), [introductory] The Empirical Mindset in Computer Science Charles E. Perkins (FutureWei Technologies, Santa Clara), [intermediate] Beyond LTE: the Evolution of 4G Networks and the Need for Higher Performance Handover System Designs Sudhakar M. Reddy (U Iowa, Iowa City), [introductory] Test and Design for Test of Digital Logic Circuits Robert Sargent (Syracuse U), [introductory] Validation of Models Mubarak Shah (U Central Florida, Orlando), [intermediate] Visual Crowd Analysis Steffen Staab (U Koblenz), [intermediate] Programming the Semantic Web Mike Thelwall (U Wolverhampton), [introductory] Sentiment Strength Detection for Twitter and the Social Web Jeffrey D. Ullman (Stanford U), [introductory] MapReduce Algorithms Nitin Vaidya (U Illinois, Urbana-Champaign), [introductory/intermediate] Distributed Consensus: Theory and Applications Philip Wadler (U Edinburgh), [intermediate] Topics in Lambda Calculus and Life ORGANIZING COMMITTEE: Adrian Horia Dediu (Tarragona) Carlos Martín-Vide (Tarragona, chair) Florentina Lilica Voicu (Tarragona) REGISTRATION: It has to be done at http://grammars.grlmc.com/sstic2014/registration.php The selection of up to 8 courses requested in the registration template is only tentative and non-binding. For the sake of organization, it will be helpful to have an approximation of the respective demand for each course. Since the capacity of the venue is limited, registration requests will be processed on a first come first served basis. The registration period will be closed when the capacity of the venue will be complete. It is very convenient to register prior to the event. FEES: As far as possible, participants are expected to attend for the whole (or most of the) week (full-time). Fees are a flat rate allowing one to participate to all courses. They vary depending on the registration deadline. ACCOMMODATION: Information about accommodation is available on the website of the School. CERTIFICATE: Participants will be delivered a certificate of attendance. QUESTIONS AND FURTHER INFORMATION: florentinalilica.voicu(a)urv.cat POSTAL ADDRESS: SSTiC 2014 Lilica Voicu Rovira i Virgili University Av. Catalunya, 35 43002 Tarragona, Spain Phone: +34 977 559 543 Fax: +34 977 558 386 ACKNOWLEDGEMENTS: Departament dEconomia i Coneixement, Generalitat de Catalunya Universitat Rovira i Virgili

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International hackathon "Network of BioThings", April 26-27, Maastricht
by Egon Willighagen 28 Mar '14

28 Mar '14

Hi all, I don't think this passed the ML yet, but BiGCaT is organizing the European node of a joined, world-wide "Network of BioThings" hackathon: http://projects.bigcat.unimaas.nl/hackaton-biothings/ Registration is free, and can be done here: http://projects.bigcat.unimaas.nl/hackaton-biothings/register/ Grtz, and a nice weekend, Egon -- E.L. Willighagen Department of Bioinformatics - BiGCaT Maastricht University (http://www.bigcat.unimaas.nl/) Homepage: http://egonw.github.com/ LinkedIn: http://se.linkedin.com/in/egonw Blog: http://chem-bla-ics.blogspot.com/ PubList: http://www.citeulike.org/user/egonw/tag/papers ORCID: 0000-0001-7542-0286

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The 4th VIB International PhD Symposium - VIBes in Bioscience 2014
by Şule Yılmaz 28 Mar '14

28 Mar '14

Dear, Ph.D. students from VIB, Belgium, are organizing the “VIBes in Biosciences 2014” symposium which aims to bring together Ph.D. candidates from different areas in life sciences. This symposium is organized to stimulate networking, listen to renowned speakers, including a Nobel laureate, and transfer skills through workshops. The symposium will take place *from* *17 to 19 September 2014* in the Horta venue in *Antwerp, Belgium.* The symposium offers an exciting scientific program with topics that concern every doctoral student. In addition, workshops are offered that provide hands-on practicals on key skills to help Ph.D. candidates during their studies. Importantly, the Organizing Committee of the symposium has set aside a budget to reimburse travel costs and attendance for a limited number of visiting international Ph.D. students. In order to reach as many Ph.D. students as possible, we would appreciate it very much if you could forward this e-mail to everyone whom it may concern. In attachment, you can also find the poster announcing the symposium. Detailed information can be found on www.vibes2014.org <http://www.vibes2014.org> Please do not hesitate to contact us for more information. With kind regards, The VIBes 2014 Organizing Committee Liesbeth Aerts, Özden Akay , Alice Borghi , Michaela Conrad, Sylvester Holt, Nevena Hristozova, Michal Janiak, Michiel Krols, Marie Lork, Laura Meloni, Esther Meersman, Raffaele Mori, Ehsan Sabaghian, Karolina Slowicka, Giel Tanghe, Kevin Titeca, Niels Vandamme , Lana Vandersarren, Tessa Vermeire, Elke Ydens and Şule Yılmaz

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Job: Senior Bioinformatician - AgResearch New Zealand
by Joachim Jacob 26 Mar '14

26 Mar '14

Anybody looking for a position down under, this is your chance. ---------------------------------------------------------------------- Message: 1 Date: Wed, 26 Mar 2014 04:00:55 +0000 From: "Maqbool, Nauman" <nauman.maqbool(a)agresearch.co.nz> Subject: [bioinfo-core] Job: Senior Bioinformatician - AgResearch New Zealand To: "bioinfo-core(a)lists.open-bio.org" <bioinfo-core(a)lists.open-bio.org> Message-ID: <68BF05B83D290941A9CBAF3386F26B2557DF5B38(a)invexcpv01.agresearch.co.nz> Content-Type: text/plain; charset="us-ascii" Dear all I would like to bring the following position to your notice. I would also appreciate if this could please be circulated to your wider network. Regards Nauman ----------------------------------------------------- Senior Bioinformatician AgResearch Ltd. New Zealand AgResearch is a Crown Research Institute with the purpose of enhancing the value, productivity and profitability of New Zealand's agricultural sector. The Bioinformatics team supports scientific research in a range of areas to the benefit of the pastoral agricultural sector. We are seeking a highly motivated individual with excellent training and expertise in Bioinformatics to join our team. The successful candidate will be responsible for providing Bioinformatics consultancy to a range of science projects. Main duties will involve analysing high throughput/high-dimensional 'omics data from mostly non-model organisms, this includes the design, development, implementation and testing of bioinformatics pipelines for Next-Gen Sequencing (NGS) data, assembly and expression analysis of NGS data and contribution towards interpreting the results. Experience in working with Genotyping by Sequencing data would be advantageous. The ideal candidate will also have some experience or an interest in integrating multi-faceted 'omics data to understand underlying systems and biological networks. This is a senior and permanent position. The successful applicant will have a PhD or high level postgraduate qualification in Bioinformatics (or related field) with at least five years of related work experience. A thorough knowledge of Unix, scripting language (Perl/Python or similar) and an understanding of biological databases along with various Bioinformatics tools is required. This is a highly collaborative role, where the incumbent will be working alongside scientists on a regular basis thus requiring a good knowledge of Genetics and Molecular Biology. Strong communication skills, with the ability to effectively articulate complex, technical information to the clients is highly desirable. Other requirements are good organisational abilities along with excellent interpersonal and relationship building skills. The position will be based at our Grasslands campus in Palmerston North and will be part of the wider Bioinformatics and Statistics team. Palmerston North, a university city, is 30 km from the coast, 2 hours from ski fields, and 2 hours from Wellington. The AgResearch Grasslands campus is situated in pleasant rural surroundings with easy access to the central city. The surrounding area offers many outdoor recreational opportunities. The position is available immediately and will be open until filled. For informal inquiries please contact Dr. Nauman Maqbool (nauman.maqbool(a)agresearch.co.nz) Applications including a CV highlighting relevant research experience, a cover letter and contact details of three referees should be submitted online at: https://careers.sciencenewzealand.org/jobdetails/ajid/S2um7/Senior-Bioinfor… Only applications submitted online will be accepted. ------------------------------ Nauman Maqbool PhD Group Leader Knowledge & Analytics T +64 7 838 5043 E nauman.maqbool(a)agresearch.co.nz AgResearch Limited Ruakura Research Centre East Street, Private Bag 3123, Hamilton, New Zealand T +64 7 856 2836 F +64 7 838 5012 www.agresearch.co.nz AgResearch - Farming Food and Health. First Te Ahuwhenua Te Kai me te Whai Ora. Tuatahi

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Bioinformatician position vacancy: UCL, Brussels
by ahmed 25 Mar '14

25 Mar '14

Dear all, Please feel free to spread the offer attached to this e-mail! best regards, Ahmed -- *Ahmed Essaghir, PhD* ** SSS/DDUV ICP Avenue Hippocrate 75, bte B1.75.02 B-1200 Woluwe-Saint-Lambert *Phone:* +32(0)27647585 *Fax:* +32(0)27647430

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