February 2010 - beg-bogas@psb.ugent.be

[Beg-bogas] update error Tetur06g8179
by Lieven Sterck 25 Feb '10

25 Feb '10

2010/02/25 13:50:17 An error occured while updating Tetur06g8179 from Tetur!! Error message below: No data for Tetur06g8179, from Tetur, 666666!!

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[Beg-bogas] [BOGAS] #147: inconsistencies between history and locked
by BOGAS 22 Feb '10

22 Feb '10

#147: inconsistencies between history and locked ---------------------+------------------------------------------------------ Reporter: liste | Owner: kebil Type: defect | Status: new Priority: major | Milestone: Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ sometimes the name of the last annotator is not correct (eg. diff between search result and page info) ???? -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/147> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation System

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[Beg-bogas] [BOGAS] #153: open edit in uniq windows
by BOGAS 19 Feb '10

19 Feb '10

#153: open edit in uniq windows -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: minor | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- change the 'target' of the edit window! include the locusID in it => always new window for every edit -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/153> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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Re: [Beg-bogas] [BOGAS] #139: search of genes from blast
by BOGAS 19 Feb '10

19 Feb '10

#139: search of genes from blast ---------------------+------------------------------------------------------ Reporter: strom | Owner: liste Type: defect | Status: assigned Priority: major | Milestone: Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ Changes (by liste): * status: new => assigned Comment: Now also the start - stop is reported in the search result. however does not completely fix the issue (still no way to see how many hits in a region) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/139#comment:2> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] prod versie
by Kenny Billiau 18 Feb '10

18 Feb '10

Hoi, er zijn een paar problemen: - /watchlist url werkt niet - op /oversight gaat er soms iets mis met de AJAX request en krijg je een blanco scherm te zien hh, Kenny -- ================================================================== Kenny Billiau Scientific Programmer Bioinformatics Group Max-Planck-Institut für Molekulare Pflanzenphysiologie billiau(a)mpimp-golm.mpg.de ==================================================================

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[Beg-bogas] Fwd: Fwd: Re: update error Connection
by HelpDesk 18 Feb '10

18 Feb '10

FYI -------- Original Message -------- Subject: Fwd: Re: [Beg-bogas] update error Connection Date: Thu, 18 Feb 2010 09:06:57 +0100 From: HelpDesk <help(a)psb.ugent.be> To: Lieven Sterck <liste(a)psb.vib-ugent.be>, Thomas Van Parys <thpar(a)psb.ugent.be> CC: Luc Van Wiemeersch <luwie(a)psb.ugent.be> Volgens de process list komen al deze connecties van bogas van cluster nodes. Dus vermoedelijk worden deze connecties niet proper afgesloten. kan ik deze processen 'killen'? Dany -------- Original Message -------- Subject: Re: [Beg-bogas] update error Connection Date: Thu, 18 Feb 2010 09:00:44 +0100 From: HelpDesk <help(a)psb.ugent.be> To: Lieven Sterck <liste(a)psb.vib-ugent.be>, Thomas Van Parys <thomas.vanparys(a)psb.ugent.be> CC: Luc Van Wiemeersch <luwie(a)psb.vib-ugent.be> Gezien er de jongste weken regelmatig problemen waren met psbsql02 (max_connections reached) heb ik gisteren in samenspraak met Thomas een extra beveiliging ingebracht en de parameter max_user_connections toegevoegd. Deze heeft de waarde 50. M.a.w. een user kan dus max. 50 concurrent connections openen naar een db op psbsql02. Max_connections is op 200 gebleven. Dus alle gebruikers samen kunnen dus 200 connecties opzetten maar is beperkt tot 50 voor 1 gebruiker. Uit deze boodschap blijkt dat user bogas dus meer dan 50 connecties nodig had. Is dat normaal? Dany On 17/02/2010 21:55, Lieven Sterck wrote: > 2010/02/17 21:55:42 > An error occured connecting to the database server > Error message below: > > DBI connect('bogas_tetur:psbsql02:3306','bogas',...) failed: User bogas already has more than 'max_user_connections' active connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 261 > _______________________________________________ > Beg-bogas mailing list > Beg-bogas(a)psb.ugent.be > https://maillist.psb.ugent.be/mailman/listinfo/beg-bogas >

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Feb '10

17 Feb '10

2010/02/17 22:28:42 An error occured connecting to the database server Error message below: DBI connect('bogas_dev:psbsql02:3306','bogas',...) failed: User bogas already has more than 'max_user_connections' active connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 261

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Feb '10

17 Feb '10

2010/02/17 21:55:42 An error occured connecting to the database server Error message below: DBI connect('bogas_tetur:psbsql02:3306','bogas',...) failed: User bogas already has more than 'max_user_connections' active connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 261

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Feb '10

17 Feb '10

2010/02/17 21:08:54 An error occured connecting to the database server Error message below: DBI connect('bogas_dev:psbsql02:3306','bogas',...) failed: User bogas already has more than 'max_user_connections' active connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 261

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 17 Feb '10

17 Feb '10

2010/02/17 21:04:54 An error occured connecting to the database server Error message below: DBI connect('bogas_dev:psbsql02:3306','bogas',...) failed: User bogas already has more than 'max_user_connections' active connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 261

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