-------- Original Message --------
Subject: Ectocarpus Bogas
Date: Mon, 29 Oct 2007 17:54:26 +0100
From: Mark COCK <cock(a)sb-roscoff.fr>
To: Lieven Sterck <lieven.sterck(a)psb.ugent.be>, Kenny Billiau
<kenny.billiau(a)psb.ugent.be>
Hi Lieven and Kenny,
A few things for the website.
- Some of the searches (keywords, etc) don't work
yet but presumably this is being done.
- Will there be automatic GO annotations?
- We have identified several genes as being
specifically expressed during different stages of
the life cycle. Some of the data corresponding to
this is in the Arrayexpress database. It would be
nice to include a link to this expression data in
the annotation but it is not always easy to go
from the partial cDNA clones (which often
correspond to 3' untranslated regions) to the
gene models. Is there a way of going to a gene
model using a position on a sctg?
- I have a problem getting Artemini to work on my
Mac (although it seems to work fine on another
Mac in the office and on PCs). I re-installed
Java and Firefox and that seemed to fix things
partially but there is still an error message
half the time:
The stracktrace is printed to the console
Message: Parse error at this point
41527), complement (9852..9936)): Parse error after reading "-"
Any ideas?
Best,
Mark
--
J. Mark Cock
Algal Genetics Group, UMR 7139 CNRS-UPMC
Végétaux Marins et Biomolécules (Marine Plants and Biomolecules)
Station Biologique, Place Georges Teissier, BP74
29682 Roscoff Cedex, France
48° 43' 37.33" N 3° 59' 17.41" W
Tel: 33 2 98 29 23 60, Fax: 33 2 98 29 23 85
Email: cock(a)sb-roscoff.fr
http://www.sb-roscoff.fr/UMR7139/en/genetics.html
--
==============================================================
Lieven Sterck Predoctoral fellow
Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809
VIB Department of Plant Systems Biology, UGent
Bioinformatics and Evolutionary Genomics Division
Technologiepark 927, B-9052 Gent, Belgium
Email: lieven.sterck(a)psb.ugent.be
Website: http://bioinformatics.psb.ugent.be
--------------------------------------------------------------
Algal Genetics Group
UMR 7139 CNRS-UPMC
Végétaux Marins et Biomolécules (Marine Plants and Biomolecules)
Station Biologique
Place Georges Teissier, BP74
29682 Roscoff Cedex, France
Website: http://www.sb-roscoff.fr/UMR7139/en/genetics.html
==============================================================
I'm not a member .. do you hear me?
--
==================================================================
Kenny Billiau
Web Developer
Tel:+32 (0)9 331 36 95 fax:+32 (0)9 3313809
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
kenny.billiau(a)psb.ugent.be http://bioinformatics.psb.ugent.be
==================================================================
