- beg-bogas@psb.ugent.be - maillist.psb.ugent.be

[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 21 Sep '10

21 Sep '10

2010/09/21 17:07:24 An error occured connecting to the database server Error message below: DBI connect('bogas_poptr:psbsql04:3306','bogas',...) failed: Too many connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 21 Sep '10

21 Sep '10

2010/09/21 17:03:54 An error occured connecting to the database server Error message below: DBI connect('bogas_ostta:psbsql04:3306','bogas',...) failed: Too many connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 260

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 21 Sep '10

21 Sep '10

2010/09/21 17:00:24 An error occured connecting to the database server Error message below: DBI connect('bogas_tetur:psbsql04:3306','bogas',...) failed: Too many connections at /www/group/biocomp/extra/bioinformatics_prod/webtools/sandbox/liste/BOGAS/trunk/src/perl/modules/BOGAS/DB.pm line 260

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[Beg-bogas] GV users
by Thomas Abeel 10 Sep '10

10 Sep '10

There are some people using GV quite extensively from BOGAS. I know where they are from, but don't know who they are. Do you guys have any idea? Madrid, Spain Heraklion, Greece Bellville, South Africa Rioja, Spain thanks, Thomas

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[Beg-bogas] BOGAS user registration
by Ryan Austin 09 Sep '10

09 Sep '10

Dear BOGAS Tech Support, I was referred to the Pichia pastoris genome on your website from Mattanovich et al (2009) "Open access to sequence: Browsing the Pichia pastoris genome." Microbial Cell Factories 8:53. I'd like to become a registered user with the site. I'm interested in Mass-spec based proteomic analysis of Pichia and it would be useful to have access to the annotated gene function pages. Thanks for any help you can offer me accessing the site, Ryan Ryan Austin, Ph.D. Institute for Systems Biology Seattle, WA 98103 (206) 732-1264

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[Beg-bogas] <sin asunto>
by Pedro Hernandez 08 Sep '10

08 Sep '10

Please, could you check these tetur35g01600 and tetur35g00840 ? Looks that they are at the same position.... I think the best model is tetur35g01600, but I can not delete tetur35g00840 using GenomeView Please, tell me if I am doing something wrong. Thanks, -------------------------------------------- Pedro Hernandez Crespo Centro de Investigaciones Biologicas-C.S.I.C. Lab. Interacciones Planta-Insecto (Lab240 / Lab202) Ramiro de Maeztu 9 28040 MADRID Tel: +34 91 8373 112 Ext 4393/4394 Fax: +34 91 5360 432 http://www.cib.csic.es/es/grupo.php?idgrupo=36 ---------------------------------------------------------------------------- Este mensaje y cualquier fichero anexo al mismo, contiene información de carácter confidencial dirigida exclusivamente a su(s) destinatarios(s) y, en su caso, sometida a secreto profesional. Queda prohibida su difusión, copia o distribución a terceros. Si Vd. ha recibido este mensaje por error, se ruega lo comunique inmediatamente por esta misma vía y proceda a su completa eliminación. The information in this e-mail, and any attachments, is confidential and, if any, protected by a professional privilege, and intended solely for the attention and use of the named addresse(s). You are hereby notified that any dissemination, copy or distribution of this information is prohibited. If you have received this communication in error, please notify the sender by reply e-mail and delete it. ----------------------------------------------------------------------------

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[Beg-bogas] [BOGAS] #168: extent 'inactivate' functionality
by BOGAS 09 Aug '10

09 Aug '10

#168: extent 'inactivate' functionality -------------------------+-------------------------------------------------- Reporter: liste | Owner: liste Type: enhancement | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | -------------------------+-------------------------------------------------- when clicking open text field to enter the reason why inactive (or active). (save comment in gene-comment) maybe also add default checkboxes (TE, pseudo, ...) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/168> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #167: inserting alt models
by BOGAS 27 Jul '10

27 Jul '10

#167: inserting alt models ---------------------+------------------------------------------------------ Reporter: liste | Owner: liste Type: defect | Status: new Priority: major | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ need to check/implement how to insert alt models for a locus. => process all from one GV/art session?? use some tag? => add 'gene action' : create alt model for this locus? Option B perhaps more feasible.... -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/167> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #166: new locus name assignmrnt
by BOGAS 15 Jul '10

15 Jul '10

#166: new locus name assignmrnt ------------------------------+--------------------------------------------- Reporter: liste | Owner: liste Type: defect | Status: new Priority: major | Milestone: BOGAS_v4 Component: ArteminiServices | Version: Keywords: | ------------------------------+--------------------------------------------- what if locus id already exists => no check for the moment (prob espec for inbetween => also what if no 'space' left between 2 genes??) -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/166> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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[Beg-bogas] [BOGAS] #165: system message only shown in logged in section
by BOGAS 09 Jul '10

09 Jul '10

#165: system message only shown in logged in section ---------------------+------------------------------------------------------ Reporter: liste | Owner: liste Type: defect | Status: new Priority: minor | Milestone: BOGAS_v4 Component: Website | Version: Keywords: | ---------------------+------------------------------------------------------ bug fixes and such should also be shown in the public version!! -- Ticket URL: <http://psbsvn01/trac/BOGAS/ticket/165> BOGAS <http://bioinformatics.psb.ugent.be/webtools/bogas> Bioinformatics Online Genome Annotation Service

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