- beg-bogas@psb.ugent.be - maillist.psb.ugent.be

[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:33:23 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:30:10 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:26:54 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:23:40 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:20:27 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:17:13 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:13:59 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] update error Connection
by liste＠psb.vib-ugent.be 23 Jan '13

23 Jan '13

2013/01/23 13:10:46 An error occured connecting to the database server Error message below: No config found for genome 'Ost809' and release ''! at CheckAndStartBOGASupdate.pl line 76

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[Beg-bogas] Move of DBs to new SQL server
by Lieven Sterck 22 Jan '13

22 Jan '13

Dear bogas/orcae users, I'm currently moving all the bogas DBs to a new server (psbsql05) and while doing so also renaming them to orcae_% What I need from you: * inform me of the genomes that currently are still being curated on a regular basis (and perhaps assist in planning the move of those ones) * inform of DBs that can be deleted, so that I don't have to move them * confirm to me you get this email also via the beg-orcae address * let me know if you have or will need access to the DBs on psbsql05, than we 'copy' your rights from the psbsql04 thx, L. -- ============================================================== Lieven Sterck, PhD Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck(a)psb.vib-ugent.be Website: http://bioinformatics.psb.ugent.be ============================================================== "Facts are meaningless. You could use facts to prove anything that's even remotely true" - H. Simpson

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[Beg-bogas] Search for ambiguous aa motifs with GenomeView
by Alexander Schober 19 Jan '13

19 Jan '13

Hi Thomas Abeel, i am a new student at SAMS and have just started to work on a LRR-ROCO project with my supervisor Claire Gachon. We already wrote an email yesterday, and therefore i wanted to thank you for your kind answer! Unfortunately we came up with another little problem regarding the handling of GenomeView. I opened up a random locus (e.g. Esi0003_0092) and tried to search for an ambiguous amino acid motif(e.g. LxxLxLxxNxL), using the Ctrl+F command. Sadly, i was not able to feed in the query motif in a proper way to get hits. (tried: stars, dots, dashes... also considered faq and manual) How do i have to type in the ambiguous amino acids within an motif to get hits? Thank you very much in advance! Best wishes and a nice weekend, Alex

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