-------- Original Message -------- Subject: Ectocarpus Bogas Date: Mon, 29 Oct 2007 17:54:26 +0100 From: Mark COCK <cock@sb-roscoff.fr> To: Lieven Sterck <lieven.sterck@psb.ugent.be>, Kenny Billiau <kenny.billiau@psb.ugent.be> Hi Lieven and Kenny, A few things for the website. - Some of the searches (keywords, etc) don't work yet but presumably this is being done. - Will there be automatic GO annotations? - We have identified several genes as being specifically expressed during different stages of the life cycle. Some of the data corresponding to this is in the Arrayexpress database. It would be nice to include a link to this expression data in the annotation but it is not always easy to go from the partial cDNA clones (which often correspond to 3' untranslated regions) to the gene models. Is there a way of going to a gene model using a position on a sctg? - I have a problem getting Artemini to work on my Mac (although it seems to work fine on another Mac in the office and on PCs). I re-installed Java and Firefox and that seemed to fix things partially but there is still an error message half the time: The stracktrace is printed to the console Message: Parse error at this point 41527), complement (9852..9936)): Parse error after reading "-" Any ideas? Best, Mark -- J. Mark Cock Algal Genetics Group, UMR 7139 CNRS-UPMC Végétaux Marins et Biomolécules (Marine Plants and Biomolecules) Station Biologique, Place Georges Teissier, BP74 29682 Roscoff Cedex, France 48° 43' 37.33" N 3° 59' 17.41" W Tel: 33 2 98 29 23 60, Fax: 33 2 98 29 23 85 Email: cock@sb-roscoff.fr http://www.sb-roscoff.fr/UMR7139/en/genetics.html -- ============================================================== Lieven Sterck Predoctoral fellow Tel:+32 (0)9 3313821 Fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, UGent Bioinformatics and Evolutionary Genomics Division Technologiepark 927, B-9052 Gent, Belgium Email: lieven.sterck@psb.ugent.be Website: http://bioinformatics.psb.ugent.be -------------------------------------------------------------- Algal Genetics Group UMR 7139 CNRS-UPMC Végétaux Marins et Biomolécules (Marine Plants and Biomolecules) Station Biologique Place Georges Teissier, BP74 29682 Roscoff Cedex, France Website: http://www.sb-roscoff.fr/UMR7139/en/genetics.html ==============================================================