February 2022 - BBClist - maillist.psb.ugent.be

ECCB2022 | Calls for Proceedings, Highlight Papers, Applications and Posters: NOW OPEN!
by Eva Alloza 09 Feb '22

09 Feb '22

Dear colleagues, All the calls for the 21st European Conference on Computational Biology - ECCB2022 <https://eccb2022.org> are now open: * Call for Proceedings * Call for Highlight Papers * Call for Applications * Call for Posters * Call for Workshops/SIGs - Deadline: February 17 * Call for Tutorials- Deadline: February 17 Check the calls and deadlines: https://eccb2022.org/calls Please consider submitting your proposals and help us disseminate the open calls among your contacts. You can find the second newsletter <https://bcocongress.com/newsbco/ECCB2022/02/02ECCB.html> below, a post in twitter <https://twitter.com/ECCBinfo/status/1491372026459656193> and in linkedin <https://www.linkedin.com/feed/update/urn:li:activity:6897142829240397824>. Warm regards, -- Eva Alloza Training and Support Officer Spanish National Bioinformatics Institute (INB/ELIXIR-ES) coordination node mail:eva.alloza@bsc.es web:http://inb-elixir.es Barcelona Supercomputing Center (BSC-CNS) Pl. Eusebi Güell, 1-3. E-08034 Barcelona, Spain ------------------------------------------------------------------------ 21st European Conference on Computational Biology 21st European Conference on Computational Biology <http://mail.eventsairmail.com/ls/click?upn=EU9ggqWL9UGtw-2FWRLoBKrtd8JsjWfs…> The calls are now open <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EueByyahnvg…> *The calls* for Proceedings, Highlight Papers, Applications and Posters *are open.* *Send your proposals* and do not miss the opportunity to be an active part of the conference. Proceedings *Proceedings* Read the call <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EueByyahnvg…> Submit your proposal <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> Highlights *Highlights* Read the call <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EueByyahnvg…> Submit your proposal <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> Applications *Applications* Read the call <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EueByyahnvg…> Submit your proposal <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> Posters *Posters* Read the call <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EueByyahnvg…> Submit your proposal <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> Last days <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EueByyahnvg…> We would like to remind you that the submission deadline for the Workshops/SIGs and Tutorials call is on *Thu, 17 Feb 2022* Workshops *Workshops/SIGs* Read the call <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86JcXNlWtAtMr…> Submit your proposal <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> Tutorials *Tutorials* Read the call <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86MM2gSpKarbt…> Submit your proposal <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> Visit our website for more information *ECCB2022.org <http://mail.eventsairmail.com/ls/click?upn=EU9ggqWL9UGtw-2FWRLoBKrtd8JsjWfs…>* #ECCB2022 <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86I9M5CnW9VF-…> #ECCB2022 <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86IIhk8LA29p1…> *Organised by:* BSC <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86NN8S7iAhePN…> INB <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86ITKzm0FTLx7…> ELIXIR Spain <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86ITKzm0FTLx7…> Bco Congresos <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86IZ8Vkhn8oIW…> Facebook <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86JXpdeYbu-2F…> Twitter <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86EaVGS8wj4kB…> LinkedIn <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86LjbR4s-2BPd…> Instagram <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86FV50uhrxSD-…> Web Site <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86IZ8Vkhn8oIW…> E-Mail <mailto:congresos@bcocongresos.com> *TECHNICAL SECRETARIAT* Plaza Europa 17-19, 1st floor 08908 L'Hospitalet del Llobregat, Barcelona (Spain) +34 93 882 38 78 eccb2022(a)bcocongresos.com Policy Privacy <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86IZ8Vkhn8oIW…> | View Browser <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86F-2F6kFiVgu…>

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Health-RI is hiring!
by Celia van Gelder 09 Feb '22

09 Feb '22

Health-RI is hiring! Are you passionate about #health <https://www.linkedin.com/feed/hashtag/?keywords=health&highlightedUpdateUrn…> and #data <https://www.linkedin.com/feed/hashtag/?keywords=data&highlightedUpdateUrns=…>? Are you looking for a challenging #job <https://www.linkedin.com/feed/hashtag/?keywords=job&highlightedUpdateUrns=u…> in a dedicated team of high-performing professionals? Then we would like to hear from you. Take a look at our open vacancies: https://lnkd.in/dji63zVE In particular I would like to draw your attention to the vacancies in the FAIR Data team for a program manager, a semantic/metadata specialist and a trainer/training coordinator! Please spread the word in your organization as you see fit. Best Celia -- Dr. Celia W.G. van Gelder Training Programme Manager DTL/ELIXIR-NL/Health-RI ELIXIR Training Platform Leader tel. +31613375327 e-mail: celia.van.gelder(a)dtls.nl websites: https://www.dtls.nl/, https://www.elixir-europe.org/platforms/training skype: celia.van.gelder Office: DTL | Jaarbeurs Innovation Mile (JIM) | 6th floor Beatrixgebouw | Jaarbeursplein 6 | 3521 AL Utrecht Postal address: Postbus 8500 | 3503 RM Utrecht While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside yours.

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UAntwerpen is hiring a Bioinformatics Core Facility Manager
by Kris Laukens 08 Feb '22

08 Feb '22

Dear colleagues, UAntwerpen is hiring a Bioinformatics Core Facility Manager. Biomina (biomedical informatics network Antwerpen) is a new Core Facility that delivers professional bioinformatics services to support biomedical, clinical, biological, and bio-engineering labs of the UAntwerpen and external clients in hospitals and industry. The mission is to 1) build sustainable support, training, and collaboration models; 2) increase bioinformatics capacity to meet growing demands; and 3) build a strong bioinformatics community. The Bioinformatics Core Facility Manager will be the daily lead of this facility, which is built around a multi-disciplinary UAntwerpen consortium that unites life scientists and data scientists in bioinformatics and medical informatics. We will embed the selected candidate in the Adrem Data Lab (Department of Computer Science). He/she will interact closely with partners from the Medical, Life Sciences, and Sciences faculties. More info can be found here: https://bit.ly/biominacf Interested candidates are welcome to contact me (kris.laukens(a)uantwerpen.be<mailto:kris.laukens@uantwerpen.be>) for more info. Thanks for forwarding this vacancy to potential candidates. Kind regards, Kris -- Kris Laukens, PhD Professor bioinformatics - biodata mining Adrem data lab Center for Precision Medicine Technologies (PreMeT) Biomedical Informatics Network Antwerpen (biomina) Department of Computer Science University of Antwerp Middelheimlaan 1, G.111 B-2020 Antwerpen, Belgium T +32 (0)3 265 33 10 E kris.laukens(a)uantwerpen.be<mailto:kris.laukens@uantwerpen.be> W www.uantwerpen.be/en/staff/kris-laukens/<http://www.uantwerpen.be/en/staff/kris-laukens/>

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Tenure track position "Computational design of biosystems" at Ghent University
by Kim DE RUYCK 08 Feb '22

08 Feb '22

Please find below a vacancy at UGent on behalf of Hanne Guns. Best regards, Kim De Ruyck Tenure track position on “Computational design of biosystems” available at the Department of Data Analysis and Mathematical Modelling of the Faculty of Bioscience Engineering, Ghent University, Belgium. The Faculty of Bioscience Engineering at the Ghent University is looking for a Professor in a tenure track system, in the discipline of Computational design of biosystems . On the one hand, the candidate is expected to lecture various courses, supervise bachelor and master thesis students and contribute to post-academic programs. On the other hand, the candidate conducts research in the modelling, algorithmic design and optimization of biosystems. Part of this academic research also consists of publishing in international scientific peer-reviewed journals and attracting funding and PhD students. The candidate’s position will be funded for an initial period of 5 years and will be converted into a permanent appointment as an associate professor after a positive evaluation by the University Board. A € 210.000 package will also be provided as a starting grant. The [ https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcareer012… | complete vacancy ] can be found on the job page of Ghent University. Interested candidates are expected to submit their application before the 23 rd of February 2022 through the e-recruitment system on this page. [ https://www.ugent.be/bw ] Hanne Guns Department secretary T +32 9 264 59 32 Not present on Wednesday and on Friday afternoon Department Data Analysis and Mathematical Modelling

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Vacancy for a research scientist
by Matthias Zytnicki 08 Feb '22

08 Feb '22

Dear everyone, We would like to inform you about a new job opportunity offered by INRAE (France's National Research Institute for Agriculture, Food and Environment) for a (tenured) research scientist in Toulouse, working on string processing. All the information is available on: https://jobs.inrae.fr/en/open-competitions/open-competions-research-scienti… A virtual conference presenting the job will be held on February, 15, at 3PM CET on https://inrae-fr.zoom.us/j/97653345866 Best regards, Matthias Zytnicki.

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Postdoc position available
by Han Asard 07 Feb '22

07 Feb '22

Dear colleague, We have a postdoc position available in the field of bioinformatics. However, as we are not a bio-informatics group, we are not member of the BBC list; it was suggested by a colleague. Therefore, would it be possible to post the vacancy on your list through this e-mail? Can you post this, or is it necessary that we become subscribers to the BBClist and post ourselves? The information on the position is: https://www.uantwerpen.be/en/jobs/vacancies/academic-staff/?q=2031&descr=Po… Many thanks. Kind regards, Hartelijke groeten, Prof. H. Asard [signature_2104996192] Prof. Dr. H. Asard Department of Biology Laboratory for Integrated Molecular Plant Physiology Research Groenenborgerlaan 171 B-2020 Antwerp, BELGIUM han.asard(a)uantwerpen.be<mailto:han.asard@uantwerp.be> https://www.uantwerpen.be/en/research-groups/impres/ T +32 3 265 36 38

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Lening
by Administrator 05 Feb '22

05 Feb '22

WIJ BIEDEN LENINGEN AAN VAN € 10.000 TOT € 100.000.000,00 INDIEN GENTERESSEERD, SCHRIJF ONS IN MET HET BEDRAG DAT U NODIG HEBT EN TELEFOONNUMMER E-MAIL robertmarvinfunds56(a)gmail.com -- This email has been checked for viruses by Avast antivirus software. https://www.avast.com/antivirus

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EuBIC-MS onboarding (GDPR) and Winter School 2022
by EuBIC-MS 03 Feb '22

03 Feb '22

Dear EuBIC-MS enthusiast, You are receiving this mail because you attended one of our previous events. To comply with current GDPR regulations, we have set up a new membership registration form. If you wish to remain a EuBIC-MS member and receive emails about upcoming events, please fill in the form at<https://eubic-ms.org/become-a-member/>. In the meantime, we would like to advertise our upcomingEuBIC-MS Winter School 2022. Its aim is to bring together the users and developers of computational mass spectrometry tools, as well as academia and industry. This year’s Winter School takes placein personon21-24 March 2022at theInstituto Gulbenkian de Ciência in Oeiras, Portugal . The Winter School starts with aneducational daydedicated to workshops and training in established computation MS tools and workflows. The following days, internationally renowned invited speakers will givelectures and practical workshopscovering the aspects of identification, quantification, result interpretation, and integration of MS data. We encourage all attendants to present their work with aposter. The organizing committee will make a selection of abstracts for a short 10-minuteflash talk. We especially encourage Early Career Researchers to do so. The abstract submission deadline is on Monday 14/02/2022. Early Career Researchers can apply for €500travel grantsmanaged by the organizational committee, and provided by EuPA and select national proteomics societies. The event islimited to 100 participants, so do not wait too long to register. All information is available on<https://eubic-ms.org/events/2022-winter-school/> If you no longer wish to receive emails from us please send us an email and we will remove you from the mailing list. Best regards The EuBIC-MS team

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Postdoc & PhD positions available in single-cell regulatory genomics
by Stein Aerts 02 Feb '22

02 Feb '22

Dear Bioinformatics community, We have two fully funded positions (PhD or postdoc) available in the Laboratory of Computational Biology (http://www.aertslab.org) in Leuven. You can join us in our quest to decipher the genomic regulatory code, using a combination of single-cell ATAC-seq, single-cell RNA-seq, and spatial transcriptomics. Central to this work will be the use of computational and machine-learning methods. Depending on your interest, you can also be involved in the wet-lab experiments, to perform single-cell sequencing experiments, technology development, and single-cell CRISPR screens. In both projects you will also have opportunities to explore connections with industry, particularly related to gene therapy. Project 1: the human brain In this project you will develop new computational strategies to identify human genetic variation linked to cell state changes in the human brain, with a particular focus on brain regions affected by Parkinson’s disease. You will use and combine large in-house atlases of single-cell multi-ome data (scATAC-seq + scRNA-seq) with spatial gene expression, Fiber-seq, and whole-genome sequencing (with long read) data. You will also get the opportunity to explore new analysis methods using deep learning. Check out our recent work on decoding gene regulation in the fly brain (Janssens, Aibar & Taskiran, Nature 2022). This project is funded by Aligning Science Against Parkinson’s Disease (ASAP) and brings you in contact with a vibrant international community of neuroscientists. Vacancy: https://jobs.vib.be/j/39320/computational-postdoc-single-cell-regulatory-ge… Project 2: tumor heterogeneity You will study enhancers and dynamic regulatory programs underlying cancer cell plasticity, and investigate how cancer cell states are affected by cell-cell communication within the tumor microenvironment. Check out our recent work on cancer regulatory genomics: a melanoma single-cell atlas of phenotype switching, by Wouters et al., (Nat Cell Biol 2020), and the deep learning models DeepMEL and DeepMEL2 (Minnoye & Taskiran, Genome Research 2020; Kalender Atak & Taskiran, Genome Research 2021). This project is part of our newly funded EOS consortium with the Blanpain, Marine, Lagae, and Saeys labs, so plenty of collaboration opportunities. Vacancy: https://www.kuleuven.be/personeel/jobsite/jobs/60089060 More info? Check out our website (https://aertslab.org) and our publications https://aertslab.org/#publications. Interested? Apply through the vacancies above, or drop me an email if you want to discuss further. Cheers, Stein Stein Aerts, PhD KU Leuven Professor & VIB Group Leader Laboratory of Computational Biology Herestraat 49, P.O. Box 602 3000 Leuven, Belgium Office +32 16 330710 Lab + 32 16 330142 Mobile +32 486 659003 http://www.aertslab.org

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vacancy bioinformatics scientist @ new spin-off company ImmuneWatch
by Kris Laukens 02 Feb '22

02 Feb '22

Dear colleagues, ImmuneWatch is a new bioinformatics spin-off company from the University of Antwerp and Antwerp University Hospital (Belgium). At ImmuneWatch we aim to accelerate the development of T-cell based diagnostic tools and therapies. Our mission is to make immune repertoire sequencing data interpretable and actionable by annotating T cell receptors in a clinically meaningful way. To achieve this goal, we are looking for a bioinformatics scientist who will help build and improve the products that will serve our first customers, in close collaboration with the rest of our team. See the complete job add in attachment or visit our website<https://www.immunewatch.com/careers/bioinformatics-scientist/>. Thanks for distributing the vacancy to possible candidates. Kind regards, Kris Laukens

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