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VIB Applied Bioinformatics Conference 2020 - deadline abstract 2-12-2019
by Alexander Botzki 25 Nov '19

25 Nov '19

Dear All, I would like to let you know that the deadline for the abstracts (2/12/2019) for our VIB Applied Bioinformatics Conference 2020 is approaching fast. More information and the submission details could be found here: https://www.vibconferences.be/events/applied-bioinformatics-in-life-science… Thanks a lot for your consideration. Best regards, Alex Alexander Botzki - Head of VIB Bioinformatics Core | Training Coordinator ELIXIR-BE VIB Bioinformatics Core Rijvisschestraat 126, 9052 GENT, Belgium | +32 9 248 16 00 www.bits.vib.be<http://www.bits.vib.be/> | @vibbioinfocore | https://corefacilities.vib.be<https://corefacilities.vib.be/<https://corefacilities.vib.be%3Chttps/corefacilities.vib.be/>> Alexander Botzki - Head of VIB Bioinformatics Core | Training Coordinator ELIXIR-BE VIB Bioinformatics Core Rijvisschestraat 126, 9052 GENT, Belgium | +32 9 248 16 00 www.bits.vib.be<http://www.bits.vib.be/> | @vibbioinfocore | https://corefacilities.vib.be<https://corefacilities.vib.be/> [signatureFooter (002)]

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postdoc: Integrative Network Analysis for Gene Discovery in Wheat
by Michiel Van Bel 22 Nov '19

22 Nov '19

For a joint project of the VIB Center for Plant Systems Biology and BASF Agricultural Solutions Innovation Center Gent, we are looking for a postdoctoral researcher who will develop and implement computational pipelines to build and compare different biological networks for gene function analysis in cereals. This 3-year project, starting on 1 March 2020, is fully funded by BASF and VLAIO (Flanders Innovation & Entrepreneurship). The successful applicant will be part of the Comparative Network Biology lab led by Klaas Vandepoele in VIB, but will also closely work together with BASF data scientists and program leaders. Job description * Collect and integrate public and private crop expression datasets * Develop computational pipelines to build and compare cross-species gene co-expression and regulatory networks to identify key transcription factors (TF) * Perform data analysis of DAP-seq high-thought experiments to identify TF binding sites and build TF regulatory networks * Perform/assistant data analysis on Y2H and build protein-protein interaction networks * Develop pipelines and methodologies to compare and integrate multiple biological networks * Integrative network analysis for gene function prediction and trait-associated gene identification * Closely work with both data scientists, biologists and wet-lab scientists in both VIB and BASF * Reporting of results through publications in peer-reviewed international journals. * Attending and presenting your results at international scientific events. Profile * PhD in Bioinformatics, Computational biology or similar. * Good programming (Python, R) and Linux skills are a must * Familiar with reporting in Jupyter notebook, bitbucket and git system for code sharing and sustainable data analysis * Strong ability and experience in high-throughput biological network and NGS data analysis * Knowledge in plant/crop genetics and molecular biology is a plus * You are enthusiastic about scientific research, computational biology, and want to learn more about advanced biological concepts. * You have good writing and communication skills with both data scientists and biologists * You are proficient in English. How to apply? Submit your application online to Jobsoid ( [ https://vibvzw.jobsoid.com/j/23730/post-doctoral-researcher-integrative-net… | https://vibvzw.jobsoid.com/j/23730/post-doctoral-researcher-integrative-net… ] ) by sending your letter of motivation, a detailed CV and contact info of 2 references (including e-mail addresses and phone numbers). Application deadline: 31/12/2019 or until position has been filled. Michiel Van Bel - Postdoctoral fellow Applied Bioinformatics And Biostatistics VIB-UGent Center for Plant Systems Biology Ghent University Technologiepark-Zwijnaarde 71 - 9052 Ghent - Belgium Tel. +32(0)9 331 36 95 [ http://www.psb.ugent.be/ | www.psb.ugent.be ] Genome editing, cutting-edge technology for a sustainable agriculture

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Phd in Madrid
by Stephane Rombauts 22 Nov '19

22 Nov '19

>From Krzysztof Wabnik group leader at CBGP - Centro de Biotecnología y Genómica de Plantas in Madrid, Spain Do you know somebody who wants to do PhD in programming synthetic eukaryotic microbiomes? Join me in the application for the La Caixa INPhINIT fellowship. Contact me before 20.12.19: [ mailto:k.wabnik@upm.es | k.wabnik(a)upm.es ] @PlantDynamics @CBGP_Madrid 👨‍🔬 🦠 [ https://drive.google.com/file/d/1ME8dW_6_CUSvIWGFkw_vzzf1omLPaILa/view?fbcl… | https://drive.google.com/file/d/1ME8dW_6_CUSvIWGFkw_vzzf1omLPaILa/view?fbcl… ] [ https://obrasociallacaixa.org/en/investigacion-y-becas/becas-de-la-caixa/do… | https://obrasociallacaixa.org/en/investigacion-y-becas/becas-de-la-caixa/do… ] Stephane Rombauts - Senior staff scientist Bioinformatics VIB-UGent Center for Plant Systems Biology Ghent University Technologiepark-Zwijnaarde 71 - 9052 Ghent - Belgium Tel. +32(0)9 331 38 21 [ http://www.psb.ugent.be/ | www.psb.ugent.be ] Genome editing, cutting-edge technology for a sustainable agriculture

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PhD and postdoc position
by steven.maere＠psb.vib-ugent.be 21 Nov '19

21 Nov '19

Dear all, Jeroni Galmes (University of the Balearic Islands) asked me to spread the word that he’s looking for one PhD student and one postdoc to work on Rubisco evolution. Kind regards, Steven Maere _________________________________ Prof. Dr. Ir. Steven Maere Evolutionary Systems Biology lab VIB-UGent Center for Plant Systems Biology Ghent University Technologiepark 71 B-9052 Gent, Belgium tel +32 9 3313805 http://www.psb.ugent.be/esb/ _________________________________ >

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PhD position
by Venkata Pardhasaradhi SATAGOPAM 20 Nov '19

20 Nov '19

Dear all We are looking for a candidate for following PhD position at Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg - Marie Skłodowska-Curie ITN Early Stage Researcher in MIRIADE: Multi‐omics Interdisciplinary Research Integration to Address DEmentia diagnosis Please checkout URL http://emea3.mrted.ly/2cele for more details Best regards, Venkata — Dr. Venkata Satagopam Bioinformatics Core Luxembourg Centre For Systems Biomedicine (LCSB) University of Luxembourg Campus Belval, House of Biomedicine II 6, avenue du Swing L-4367 Belvaux T +352-466-644-6421 F +352-466-644-36421 venkata.satagopam(a)uni.lu<mailto:venkata.satagopam@uni.lu> http://lcsb.uni.lu LCSB is turning 10! We’ve come a long way since launching our activities in 2009. Today, nearly 250 talented people work together to accelerate biomedicine! Stay tuned for a year full of new collaborations, exciting research projects and a unique exhibition! 15 research groups | 56 graduated PhDs | 745 scientific papers | 24 patents | over 400 collaborative projects ----- This message is confidential and may contain privileged information. It is intended for the named recipient only. If you receive it in error please notify me and permanently delete the original message and any copies. -----

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PhD position in statistical data integration for single cell CyTof experiments
by Olivier THAS 19 Nov '19

19 Nov '19

Dear all, We are looking for a motivated PhD candidate with a good background in statistics/bioinformatics/data science. You can find more details further down this email. Best wishes, Olivier *Data Integration Methods for Single Cell CyTof Experiments* At the Data Science Institute of Hasselt University, we are looking for a PhD student to work on statistical / bioinformatics methods for single cell CyTof data, and the integration of this data source with other high-dimensional (-omics) datasets. We aim to develop new methods for CyTof data dimension reduction and visualisation, and to integrate the CyTof data with baseline patient characteristics and with other high-dimensional data sources (e.g. SNP, RNASeq). This must allow for studying the relationship between the SNP or RNASeq data and the cell populations as characterised by CyTof. We also aim to develop methods for biomarker discovery using the single cell Cytof data. The project is funded for four years by a pharmaceutical company. The anticipated starting date is January 1, 2020, but this is negotiable. We are looking for a motivated candidate with a master in statistics, bioinformatics or similar. For more information: Prof. Olivier Thas (olivier.thas(a)uhasselt.be) If you are interested, please send a CV and a motivation letter to olivier.thas(a)uhasselt.be. -- Prof. dr. Olivier Thas Professor of Biostatistics I-Biostat T +32(0)11 26 82 13 - GSM +32(0)486 578974 www.uhasselt.be Universiteit Hasselt - Campus Diepenbeek Agoralaan Gebouw D - B-3590 Diepenbeek Kantoor E118

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Postdoctoral position in single-cell multi-omics data integration (Prof. Thierry Voet)
by Alejandro Sifrim 19 Nov '19

19 Nov '19

Dear, We’re looking for a postdoctoral researcher to join our multidisciplinary group with a focus on single-cell technology development at the Center of Human Genetics - KU Leuven. The candidate would focus on integrating data across multiple omics layers of individual cells using state-of-the-art statistical modelling and machine learning methods. The candidate will also contributes to leading large-scale international communities such as the Human Cell Atlas, the Gut Cell Atlas and the LifeTime initiative. More information can be found here: https://www.kuleuven.be/personeel/jobsite/jobs/55212665 For more information contact either me or Prof. Thierry Voet: Alejandro Sifrim (PhD) - alejandro.sifrim(a)kuleuven.be<mailto:alejandro.sifrim@kuleuven.be> Prof. Thierry Voet (PhD) - thierry.voet(a)kuleuven.be<mailto:thierry.voet@kuleuven.be> Best, Alejandro Sifrim. Alejandro Sifrim (PhD) Postdoctoral Researcher University of Leuven, Belgium Visiting Scientist Wellcome Trust Sanger Institute, UK alejandro.sifrim(a)kuleuven.be<mailto:alejandro.sifrim@kuleuven.be> as33(a)sanger.ac.uk<mailto:as33@sanger.ac.uk> @asifrim

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Job posting: 3 post-docs computational biology
by Andreas Beyer 19 Nov '19

19 Nov '19

Dear all We are looking for three post-doctoral researchers supporting us in our analysis of diverse omics data types. Please, see the attachment for details. Best, Andreas Beyer -- Prof. Dr. Andreas Beyer http://cellnet.cecad.uni-koeln.de/ Phone: +49 221-478 84429

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PhD position in visual analytics for pangenomes
by Smit, Sandra 18 Nov '19

18 Nov '19

Let’s try that again without typos… We are looking for a PhD student for an exciting project on Visual Analytics for Plant Pangenomes: https://jobs.tue.nl/en/vacancy/phd-student-visual-analytics-for-plant-pange… This interdisciplinary project is a collaboration between the Visualization Group at Eindhoven University of Technology (TU/e) and the Bioinformatics Group at Wageningen University, the Netherlands. Kind regards, Sandra Smit ---- Dr. Sandra Smit Assistant Professor Bioinformatics, Wageningen University Room: Radix W1.Ca.054 Phone: +31-(0)317-483061 Email: Sandra.Smit(a)wur.nl<mailto:Sandra.Smit@wur.nl><mailto:Sandra.Smit@wur.nl> ----

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PhD position in visual analytics for pangenomes
by Smit, Sandra 18 Nov '19

18 Nov '19

We are looking for a PhD student for an exiting project on Visual Analytics for Plant Pangenomes: https://jobs.tue.nl/en/vacancy/phd-student-visual-analytics-for-plant-pange… This interdisciplinary project is a collaboration between the Visualization Group at Eindhoven University of Technology (TU/e) and the Bioinformatics Group at Wageningen University, the Netherlands. Kind regards, Sandra Smit ---- Dr. Sandra Smit Assistant Professor Bioinformatics, Wageningen University Room: Radix W1.Ca.054 Phone: +31-(0)317-483061 Email: Sandra.Smit(a)wur.nl<mailto:Sandra.Smit@wur.nl> ----

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