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2023 🍾 Check what is coming up.
by BeNeLux bioinformaticians forum 05 Jan '23

05 Jan '23

[cid:image001.png@01D91546.6FFD3720] [signature_2008044598] 2023 is in around the corner! 🍾 Check what is coming up. Dear colleagues, Coming up in 2023 we are offering trainings that can help you with different stages of the Research Data Management (RDM) of your project, you can start keeping track of versions of your code and writing by following introduction to Git & GitHub. And you can make your analysis reproducible using Docker (and Singularity) for reproducible and automated data analysis. Without forgetting that you can have scalable and reproducible pipelines built with Nextflow for reproducible and automated data analysis. Find bellow the details you need to join us in any of the coming up trainings. Don’t forget to subscribe! Introduction to Git & GitHub ____________________________________________________________________________________ 8th February 2023 – Brussels Face to Face training This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers Registration and info: Link for Git & GitHub<https://training.vib.be/all-trainings/introduction-git-github-5> Docker (and Singularity) for reproducible and automated data analysis ____________________________________________________________________________________ 13th and 14th March 2023 – Leuven Face to Face training The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be highlighted as well. Registration and info: Docker and reproducibility<https://training.vib.be/all-trainings/nextflow-reproducible-and-automated-d…> Nextflow for reproducible and automated data analysis ____________________________________________________________________________________ 30th and 31st March 2023 – Leuven Face to Face training You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language. Registration and info: NextFlow automated pipeline<https://training.vib.be/all-trainings/nextflow-reproducible-and-automated-d…> Kind regards, Bruna Piereck ELIXIR Belgium Training Coordinator VIB Bioinformatics Core Technologiepark-Zwijnaarde 75 9052 Zwijnaarde, Belgium tel +32 0497 2988 73 [cid:image001.png@01D91546.6FFD3720][signature_2008044598]

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1 year Post-doctoral position in Computational biology
by BeNeLux bioinformaticians forum 05 Jan '23

05 Jan '23

Dear colleagues, We are looking for a highly motivated post-doctoral researcher to develop artificial intelligence (AI) methods (1) to design de novo ligands that target a given olfactory receptor and (2) to predict the olfactory receptors targeted by a given molecule. You will find the complete job description in the PDF file attached to this email. Best regards ---------------------------------------------------------- Dimitri Gilis Professeur 3BIO-Bioinfo École polytechnique de Bruxelles Phone: +32 2 650 36 15 E-mail: dimitri.gilis(a)ulb.be<mailto:dimitri.gilis@ulb.be>

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PhD candidate vacancies
by BeNeLux bioinformaticians forum 04 Jan '23

04 Jan '23

Good afternoon, I have several open positions for PhD candidate starting between Spring and Autumn 2023 that could be interested to your network. Would it be possible to promote them through your channel? The positions will become available between spring and autumn 2023. I am looking for people with a data science background, proficient in R or python (at least) the specific PhD trajectories vary (please see the full description at the website). https://www.lumc.nl/en/over-het-lumc/werken-bij/vacancies/b.23.pv.el.03-phd… Note the vacancies remain open until half of Febr., and won't close in two weeks (as mentioned at the website currently) https://www.linkedin.com/jobs/view/3420548584 PhD Candidate Rheumatology Data Science - AcademicTransfer<https://www.academictransfer.com/en/322092/phd-candidate-rheumatology-data-…> Best regards, Rachel Knevel Rachel Knevel , M.D. PhD Rheumatologist and ass. professor at Dept of Rheumatology LUMC, the Netherlands phone +31-71526911, +31-611307780 Visiting professor, Translational & Clinical Research Institute, Newcastle University, UK

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Introduction to Python
by BeNeLux bioinformaticians forum 28 Dec '22

28 Dec '22

[cid:image001.png@01D91AA9.9C405FC0] [signature_2008044598] Gentle hands-on introduction to Python programming Dear colleagues, Coming up in April 12th ,19th and 26th we are offering the first hybrid session of Gentle hands-on introduction to Python programming! You can join us in person or online, whatever you feel most convenient. But we advise you to be fast and join us to the limit number of in person participation! To Happen in Ghent, at the Technologiepark-Zwijnaarde, this course gently introduces programming to new programmers. There are plenty of opportunuties to apply and practice what you learn, and ask questions in a safe place. Furthermore, surprise yourself by building a substantial project over the 3 course weeks. We're going to use the popular Python programming language to prepare you for real-world research application of what you learn. Subscription and info in this link<https://training.vib.be/all-trainings/gentle-hands-introduction-python-prog…> ! Kind regards, Bruna Piereck ELIXIR Belgium Training Coordinator VIB Bioinformatics Core Technologiepark-Zwijnaarde 75 9052 Zwijnaarde, Belgium tel +32 0497 2988 73 [cid:image001.png@01D91AA9.9C405FC0][signature_2008044598]

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Two open vacancies bioinformatics @Sciensano
by BeNeLux bioinformaticians forum 28 Dec '22

28 Dec '22

Dear all, The Bioinformatics Platform at the Belgian Institute of Health (www.sciensano.be<http://www.sciensano.be>) currently has two vacancies for a bioinformatician or a computer scientist: - To work on setting up services and infrastructure within the context of the Genomics Data Infrastructure project (https://jobs.sciensano.be/content/jobpage.asp?a=DETAIL&jdkid=1029&l=DUTCH) - To work on setting up solutions and applications to enhance future pathogen outbreak responses (https://jobs.sciensano.be/content/jobpage.asp?a=DETAIL&jdkid=1056&l=DUTCH) Applications are possible using the links above. Sincerely, K Kevin Vanneste, PhD Senior scientist - Responsible Bioinformatics Platform Transversal activities in Applied Genomics (TAG) T + 32 2 642 50 65 [cid:image001.jpg@01D4595B.6D6E05D0] Rue Juliette Wytsmanstraat 14 * 1050 Brussels www.sciensano.be<http://www.sciensano.be/> P Please consider the environment before printing this e-mail

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JUNIOR LECTURER VU/UvA MASTER’S PROGRAMME BIOINFORMATICS AND SYSTEMS BIOLOGY JD
by BeNeLux bioinformaticians forum 23 Dec '22

23 Dec '22

Dear Reader, There is a Junior Lecturer position available at the VU/UvA for teaching in Bioinformatics & Systems Biology Check out the VU website : https://workingat.vu.nl/ad/junior-lecturer-juniordocent-masters-programme-b… [https://workingat.vu.nl/api/file/get/54a4a5e6-ec7f-44b4-801c-997f0e34793f]<https://workingat.vu.nl/ad/junior-lecturer-juniordocent-masters-programme-b…> Junior lecturer (juniordocent) Master’s Programme Bioinformatics and Systems Biology JD - >Working at VU<https://workingat.vu.nl/ad/junior-lecturer-juniordocent-masters-programme-b…> We are looking for a colleague who is passionate about education and dedicated to support the VU/UvA joint degree Master’s programme for Bioinformatics and Systems Biology<https://vu.nl/en/education/master/bioinformatics-and-systems-biology> Please apply... workingat.vu.nl Kind Regards, Marten Dr. Marten Postma Assistant Professor Chair Examinations Board BSc BMW/MSc BMS Leerlijncoördinator Omics en Systeembiologie BSc BMW Track coordinator Systems Biology MSc BioSB JD Member Admission Committee MSc BioSB JD Vice-chair Curriculum Committee MSc BioSB JD Member SILS Educational Committee (SEC) zoom : https://uva-live.zoom.us/j/2612815610 Room C2.102 (SILS) Swammerdam Institute for Life Sciences (SILS) University of Amsterdam (uVA) Science Park 904 1098 XH Amsterdam The Netherlands tel : +31 20 525 6225 e-mail : M.Postma(a)uva.nl<mailto:M.Postma@uva.nl> website : http://www.martenpostma.nl/science/

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Job Advertisement Bioinformatician (f/m/d)
by BeNeLux bioinformaticians forum 23 Dec '22

23 Dec '22

Dear Madams & Sirs, The Max Planck Institute for Multidisciplinary Sciences in Göttingen, Germany, is a leading international research institute of exceptional scientific breadth. With more than 40 research groups and some 1,000 employees from over 50 nations, it is the largest institute of the Max Planck Society. The department of Tissue Dynamics and Regeneration (Dr. Jochen Rink) invites applications for a position as Bioinformatician (f/m/d) You will find the complete job description as attachment to this email with a request to publish it in your department/division. Should you have any questions or need further information, please do not hesitate to contact me. We thank you in advance for your support and wish you a happy holiday season. Mit freundlichen Grüßen / Best Regards Martina Lingl Team Assistant Department of Tissue Dynamics and Regeneration Max-Planck-Institute for Multidisciplinary Sciences Am Faßberg 11, 37077 Göttingen, Germany Phone: ++49 551 201 26100 Fax: ++49 551 201 2705 office.rink(a)mpinat.mpg.de<mailto:office.rink@mpinat.mpg.de> martina.lingl(a)mpinat.mpg.de<mailto:martina.lingl@mpinat.mpg.de>

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vacature Bioinformaticus (BSc, MSc), humane genetica
by BeNeLux bioinformaticians forum 22 Dec '22

22 Dec '22

Hi all, I have a vacancy for a bioinformatician within my team! https://werkenbijumcutrecht.nl/vacatures/it/bioinformaticus-wetenschappelij… Enjoy the holidays! Met vriendelijke groet, Hanneke van Deutekom [Universitair Medisch Centrum Utrecht] Hoofd Bioinformatica | Divisie Laboratoria, Apotheek en Biomedische Genetica, Genoomdiagnostiek Universitair Medisch Centrum Utrecht | Kamernummer STR.0.308 | Huispostnummer STR.1.305 T: +31 88 75 68116 M +31 6 311 179 26| www.umcutrecht.nl<http://www.umcutrecht.nl> | Werkdagen: ma,di,do,vr ________________________________ De informatie opgenomen in dit bericht kan vertrouwelijk zijn en is uitsluitend bestemd voor de geadresseerde. Indien u dit bericht onterecht ontvangt, wordt u verzocht de inhoud niet te gebruiken en de afzender direct te informeren door het bericht te retourneren. Het Universitair Medisch Centrum Utrecht is een publiekrechtelijke rechtspersoon in de zin van de W.H.W. (Wet Hoger Onderwijs en Wetenschappelijk Onderzoek) en staat geregistreerd bij de Kamer van Koophandel voor Midden-Nederland onder nr. 30244197. P Denk s.v.p. aan het milieu voor u deze e-mail afdrukt.

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2023 is in around the corner! 🍾 Check what is coming up.
by BeNeLux bioinformaticians forum 21 Dec '22

21 Dec '22

[cid:image001.png@01D91546.6FFD3720] [signature_2008044598] 2023 is in around the corner! 🍾 Check what is coming up. Dear colleagues, Coming up in 2023 we are offering trainings that can help you with different stages of the Research Data Management (RDM) of your project, you can start keeping track of versions of your code and writing by following introduction to Git & GitHub. And you can make your analysis reproducible using Docker (and Singularity) for reproducible and automated data analysis. Without forgetting that you can have scalable and reproducible pipelines built with Nextflow for reproducible and automated data analysis. Find bellow the details you need to join us in any of the coming up trainings. Don’t forget to subscribe! Introduction to Git & GitHub ____________________________________________________________________________________ 8th February 2023 – Brussels Face to Face training This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers Registration and info: Link for Git & GitHub<https://training.vib.be/all-trainings/introduction-git-github-5> Docker (and Singularity) for reproducible and automated data analysis ____________________________________________________________________________________ 13th and 14th March 2023 – Leuven Face to Face training The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be highlighted as well. Registration and info: Docker and reproducibility<https://training.vib.be/all-trainings/nextflow-reproducible-and-automated-d…> Nextflow for reproducible and automated data analysis ____________________________________________________________________________________ 30th and 31st March 2023 – Leuven Face to Face training You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language. Registration and info: NextFlow automated pipeline<https://training.vib.be/all-trainings/nextflow-reproducible-and-automated-d…> Kind regards, Bruna Piereck ELIXIR Belgium Training Coordinator VIB Bioinformatics Core Technologiepark-Zwijnaarde 75 9052 Zwijnaarde, Belgium tel +32 0497 2988 73 [cid:image001.png@01D91546.6FFD3720][signature_2008044598]

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Postdoc/Project Manager position available | VIB Single Cell Core 🎄
by BeNeLux bioinformaticians forum 20 Dec '22

20 Dec '22

Dear colleagues, The VIB Single Cell Core is expanding, we are looking for a new colleague to support the follow-up of ongoing projects and implement novel methods where possible. Check out the vacancy via this link<https://jobs.vib.be/j/53475/single-cell-expert-project-manager-at-vib-singl…>. Thank you for forwarding this job advertisement to potential candidates in your network! [cid:part1.yU552hZ6.KG0khdI8@kuleuven.be]Happy Holidays from the Single Cell Core! https://jobs.vib.be/j/53475/single-cell-expert-project-manager-at-vib-singl… -- Niels Vandamme | Head of VIB Single Cell Core VIB - Vlaams Instituut voor Biotechnologie KU Leuven | Campus Gasthuisberg O&N5 - Herestraat 49 box 602, 3000 Leuven Niels.Vandamme(a)kuleuven.be<mailto:Niels.Vandamme@kuleuven.be>

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