- BBClist - maillist.psb.ugent.be

Reminder Research Software Engineers Survey - still one week for submission
by Alexander Botzki 28 Feb '22

28 Feb '22

Dear all, I'd like to send you the link for a survey which a number of international supporters for Research Software Engineering have put together recently. Our effort has been lead by Simon Hettrick from the Software Sustainability Institute. A blog about the results from 2018 is here: https://www.software.ac.uk/blog/2019-02-15-rse-survey-2018-results We would be delighted to have as many as possible answers from persons who write software used in research. So, please have a look at this link for more information and the questions: https://softwaresaved.limequery.com/386272?lang=en The survey will stay open for one more week. Thanks a lot for your consideration. Best regards, Alex Alexander Botzki - Head of VIB Bioinformatics Core, ELIXIR Belgium Training Coordinator VIB Bioinformatics Core Technologiepark-Zwijnaarde 75 9052 Zwijnaarde Belgium tel +32 9 224 9870 https://vib.be/labs/vib-bioinformatics-core/research | https://www.bits.vib.be | @vibbioinfocore Alexander Botzki – Head of VIB Bioinformatics Core, ELIXIR Belgium Training Coordinator VIB Bioinformatics Core Technologiepark-Zwijnaarde 75 9052 Zwijnaarde Belgium tel +32 9 224 9870 https://vib.be/labs/vib-bioinformatics-core/research | https://www.bits.vib.be | @vibbioinfocore [signature_351744268]

1 0

[Could not verify sender] Position for: Postdoctoral researcher in Medical Genetics/Bioinformatics
by Berry Kriesels 24 Feb '22

24 Feb '22

Dear all, We want to draw your attention to our vacancy for a postdoctoral researcher position in Medical Genetics/Bioinformatics. See attached. With kind regards. *Berry Kriesels* - Founder / General director *Omnigen* Bioinformatics research, services and consultancy. Papsouwselaan 119-A 2624AK Delft, 3rd floor b.kriesels(a)omnigen.nl | +31616750561 | www.omnigen.nl

1 0

PhD position in bioinformatics: mechanisms of genetic interactions in pediatric cancer
by Kemmeren-2, P.P.C. (Patrick) 24 Feb '22

24 Feb '22

Dear all, Happy to share that we have an opening for a PhD student in bioinformatics working on understanding mechanisms of genetic interactions in pediatric cancer! Interested in working on this topic and be part of a unique pediatric oncology center with multidisciplinary and dynamic environment, then please apply through the link below: https://werkenbijprinsesmaximacentrum.nl/vacature/phd-student-bioinformatic… Regards, Patrick -- Patrick Kemmeren, PhD Principal Investigator & head Big Data Core Princess Máxima Center Associate Professor UMC Utrecht T +31 (0)88 972 90 00 | M +31 (0)6 53 11 25 53 [signature_1113111550] [signature_1581634270] Princess Máxima Center for Pediatric Oncology Heidelberglaan 25 | 3584 CS Utrecht | T +31 (0)88 972 90 00 | > Website<https://research.prinsesmaximacentrum.nl/en/research-groups/kemmeren-group>

1 0

Software engineer - multi-omics data management
by Laurent Gatto 22 Feb '22

22 Feb '22

Dear all, There's a software engineer position open in my group to develop a multi-omics data management platform. The project is in collaboration with Sébastien Jodogne from the EPL (Engineering school at UCLouvain) and a large multi-disciplinary team (including clinicians from the university hospital) at in Brussels. Details and application: https://jobs.uclouvain.be/PersonnelAdministratif/job/Ing%C3%A9nieur%C2%B7e-… Do not hesitate to get in touch if you have any questions. Best wishes, Laurent --- Prof Laurent Gatto Computational Biology Unit (CBIO) de Duve Institute - UCLouvain Avenue Hippocrate, 75 - bte B1.74.10 1200 Brussels, Belgium Tel: +32 (0)2 764 74 15 http://lgatto.github.io/about

1 0

Open position: Data Governance Bioinformatics (m/f/d)
by Erick Antezana 22 Feb '22

22 Feb '22

*apologies for cross-posting* Become part of our team of highly motivated data science experts (m/f/d) to solve major challenges in modern crop protection by molecular and chemical genetics approaches. In this role you´ll be involved in developing a master data strategy for OMICs data and drive data curation and integration. Join us at Bayer to work on purposeful projects to bring our mission to life: “Health for all and Hunger for none”. YOUR TASKS AND RESPONSIBILITIES - You will develop and implement a data governance strategy for OMICs technologies in coordination with IT and semantics technology experts (m/f/d) - You will manage data maintenance, identify relevant data sources, and ensure data quality in terms of completeness, format, and consistency - You will contribute to product and platform teams in demand planning, prioritization and monitoring the use of services within project requests towards our partner - You will build cross-functional relationships to partner with the business stakeholders (m/f/d) and collaborate with Bayer’s Data Science community to co-develop innovative solutions - You will present your results in compelling stories to various stakeholders (m/f/d) to create both strategic and operational changes in business WHO YOU ARE - You have a PhD or MSc with first experience in bioinformatics, computational biology, computer science, physics or related fields - You are experienced in OMICS data and Meta-data management and able to support innovation and future-oriented data concepts - Molecular and/ or Cellular Biology experience is a plus (preferably in insects, plants and fungi) - You are experienced with relational and/or Graph Databases and proficient in using querying languages such as SQL & SPARQL - You have excellent scripting and programming skills in common Data Science languages such as R, Perl, Python (Django framework) - You have a strategic mindset and a result-oriented, motivated, and proactive personality with proven ability to efficiently work in cross-functional teams reaching joint goals You have good communication skills in English, both written and spoken; a good working knowledge of the German or French language can be beneficial This position is initially limited to two years. https://karriere.bayer.de/en/job/data-governance-bioinformatics-m-f-d--SF55… You can contact me in case of questions.

1 0

Job opportunity at NIZO | Sr. Data Scientist Management and Bioinformatics
by MA groupbox 22 Feb '22

22 Feb '22

Dear all, We would like to inform you about a new job opportunity offered by NIZO food research. Link here https://www.nizo.com/careers/senior-scientist-data-management-and-bioinform… We would appreciate that you share this information with your contacts. Sincerely, HR Department NIZO | T +31 318 659 511 A Kernhemseweg 2, 6718 ZB Ede, NL | P.O. Box 20, 6710 BA Ede, NL | [cid:image001.jpg@01D827F5.78A32C20] <https://www.linkedin.com/company/nizo-food-research/>

1 0

Bioinformatics Scientist vacancy Cyclomics (Utrecht, NL)
by Dami Rebergen 21 Feb '22

21 Feb '22

Dear Bioinformatics enthusiasts, We are expanding the team at Cyclomics. Cyclomics is a Startup that spun out of the UMC in 2018. Our technology focuses on high accuracy long read sequencing. Our patented technology helps researchers answer questions that where unanswerable at this price point before! Application areas are oncology and the argo-biotech sector, but this will expand in the coming year. Activities will be diverse and there are many opportunities to explore areas of interest within and outside of the product domain. for more information please see: https://www.linkedin.com/jobs/view/2930092091 If you have any questions, or would like to apply. Please get in touch with me! Dami Bioinformatician at Cyclomics -- Met vriendelijke groet, With kind regards, Dàmi (Dammy) Rebergen

1 0

PhD/teaching assistant position @UGent with research focus on epigenetic clocks
by Tim De Meyer 21 Feb '22

21 Feb '22

Dear colleagues, The BIOBIX Bioinformatics and Computational Genomics lab of the Dept. of Data Analysis & Mathematical Modelling at Ghent University has a vacancy for an assistant (PhD research yet with an important teaching duty). This is a 6-year appointment (initially 2-year but is renewed for 2 x 2 years upon positive evaluation). Research will focus on the epigenetic clock of aging, both regarding application and the underlying biology. Students graduating in July may apply. See: https://career012.successfactors.eu/career?company=C0000956575P&career_job_… for more details. Please forward! Best regards, Tim De Meyer & Wim Van Criekinge www.biobix.be<http://www.biobix.be> [cid:image002.jpg@01D82709.9C9AA8C0]<https://www.ugent.be/bw/nl/faculteit/100> Prof. dr. ir. Tim De Meyer Associate professor T +32 9 264 59 87 Department Data Analysis and Mathematical Modelling Research Unit BIOBIX: Bioinformatics and Computational Genomics Campus Coupure, Block A 1st floor 110.058, Coupure links 653, B-9000 Ghent, Belgium directions<https://www.google.com/maps/dir/Coupure+Links+653,+9000+Gent/@51.0527795,3.…> T administration office +32 9 264 59 32 www.ugent.be<https://www.ugent.be/bw/en> www.biobix.be e-maildisclaimer<https://helpdesk.ugent.be/e-maildisclaimer.php>

1 0

ECCB2022 | Submission deadline for Workshops/SIGs and Tutorials has been extended!
by Stephane Rombauts 16 Feb '22

16 Feb '22

1 0

Postdoc position on (single cell) transcriptomics and pediatric brain tumors
by Kemmeren-2, P.P.C. (Patrick) 16 Feb '22

16 Feb '22

Dear all, On behalf of Prof. Dr. Marcel Kool, I would like to draw your attention to a very interesting opening we have for a postdoctoral position on single cell transcriptomics, epigenetics and pediatric brain tumors. Interested in working in a cross-disciplinary and stimulating environment while working on our mission to cure children with cancer, then please apply below! https://werkenbijprinsesmaximacentrum.nl/en/vacancy/postdoc-bioinformatics-… -- Patrick Kemmeren, PhD Principal Investigator & head Big Data Core Princess Máxima Center Associate Professor UMC Utrecht T +31 (0)88 972 90 00 | M +31 (0)6 53 11 25 53 [signature_2047403584] [signature_1188603633] Princess Máxima Center for Pediatric Oncology Heidelberglaan 25 | 3584 CS Utrecht | T +31 (0)88 972 90 00 | > Website<https://research.prinsesmaximacentrum.nl/en/research-groups/kemmeren-group>

1 0