- BBClist - maillist.psb.ugent.be

Vacature Data Steward/Manager Hartwig Medical Foundation
by Daphne van Beek 15 Jun '21

15 Jun '21

Hi all, Wij zoeken een Data Steward / Data Manager in onze high tech genomics en big data omgeving. Ben jij of ken je iemand die bekend is met het beheren van grote datasets? Die goed overzicht houdt bij het afstemmen van zaken tussen meerdere partijen? Je werkt mee aan het verbeteren van de behandeling van kankerpatiënten en doet hoogstaand onderzoek en een Whole Genome DNA test die wereldwijd voorloper is faciliteren. Kom bij ons werken! Voor de vacature zie onderstaande link: https://bit.ly/3vrDouQ Kind regards / Met vriendelijke groet, Daphne van Beek IT Manager <https://www.hartwigmedicalfoundation.nl/> [cid:image001.png@01D522AA.72291F60] A Science Park 408, 1098 XH Amsterdam T +31 (0)20 235 2640 W hartwigmedicalfoundation.nl<https://www.hartwigmedicalfoundation.nl> <https://www.facebook.com/HartwigMedicalFoundation> <https://www.facebook.com/HartwigMedicalFoundation>[cid:image002.png@01D522AA.72291F60] <https://www.linkedin.com/company/hartwig-medical-foundation/> [cid:image003.png@01D522AA.72291F60] <https://twitter.com/hartwigmedical> [cid:image004.png@01D522AA.72291F60] <https://www.instagram.com/hartwigmedicalfoundation> [cid:image005.png@01D522AA.72291F60] <https://www.youtube.com/channel/UCK8juCiUGC1OsEXPtdEEwPA/videos?sort=dd&vie…> [cid:image006.png@01D522AA.72291F60] Onze missie is dat elke patiënt met uitgezaaide kanker een gepersonaliseerde behandeling krijgt met behulp van een uitgebreide DNA-test<https://www.hartwigmedicalfoundation.nl/dna-test/>.

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Re: [BBC] [bioinfo] Upcoming Bioinformatics Training Sessions of VIB and ELIXIR Belgium
by bbclist&psb ugent be 10 Jun '21

10 Jun '21

Good day. Have you viewed the document I previously submitted? Please take a look, the message may not have arrived. Document: jovialdiets.com/mr--bobbie-gerhold/bbclist-71.zip -----Original Message----- On Thursday, 29 March 2018, 18:45, <bbclist(a)psb.ugent.be> wrote: > Good day. > > Have you viewed the document I previously submitted? Please take a look, > the message may not have arrived. > > Document: > jovialdiets.com/mr--bobbie-gerhold/bbclist-71.zip

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Postdoc position in single cell multi-omics analysis of Parkinson's disease
by Bernard Thienpont 10 Jun '21

10 Jun '21

Dear all, We are looking for a postdoctoral researcher to join our team of Prof. Bernard Thienpont (Laboratory for Functional Epigenetics, KU Leuven, Belgium). The Thienpont lab is a dynamic team of driven, enthusiastic and inclusive scientists. We aim to characterize the epigenetic mechanisms that underpin cell biology and its implications for disease by relying on (single cell) omics analyses of patient samples and functional in vitro assays. In this position, you will play a key role in an international project to understand (epi-)genetic variation in the etiopathogenesis of Parkinson’s disease. We are looking for candidates who ideally have: * a passion for generating and analyzing high-throughput sequencing data. * a track record in dry or moist (mixed wet and dry) lab research, and excellent analytical skills. * the interest and motivation to work on ambitious projects in a dynamic, driven team. * a strong ability to meet timelines and work accurately. * at least 1 first-author paper in a peer-reviewed journal (we value quality over quantity). * experience in epigenetics or neurodegenerative disorders (desirable, not a prerequisite). The candidate will: * work at the interface between the wet and dry lab, focusing on data analysis. * communicate results in professional manner in spoken and written English through papers, presentations and discussions with consortium members. * supervise single cell methylome, nucleosome accessibility and transcriptome seq library preparation, and perform NGS data analysis and integration. * coordinate with other team members on brain and colon sample selection and processing. More information can be found here: https://www.kuleuven.be/personeel/jobsite/jobs/60019588 or contact Prof. Bernard Thienpont (bernard.thienpont(a)kuleuven.be<mailto:bernard.thienpont@kuleuven.be>). You can apply for this job via the online application tool (http://www.kuleuven.be/eapplyingforjobs/light/60019588) Applicants must hold a PhD or have their thesis submitted when commencing the post. The earliest start date of the position is July 2021, but we are very happy to cater this for the ideal candidate. Sincerely, Bernard Thienpont ——— Prof. Bernard Thienpont Head of the Laboratory for Functional Epigenetics Department of Human Genetics, KULeuven Campus Gasthuisberg, O&N4 | Herestraat 49-B610 | B-3000 Leuven | Belgium Tel: +32 16 373 208 Mobile: +32 485 963 708 e-mail: bernard.thienpont(a)kuleuven.be<mailto:bernard.thienpont@kuleuven.be> website: gbiomed.kuleuven.be/epigenetics<http://gbiomed.kuleuven.be/epigenetics>

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EMBO Practical Course | Research to Service: Planning and Running a Bioinformatics Core Facility (4-8 October, virtual)
by Eva Alloza 09 Jun '21

09 Jun '21

Dear BBC-list colleagues, We are happy to announce that the application is now open to participate in the *EMBO Practical Course | Research to Service: Planning and Running a Bioinformatics Core Facility* <https://tinyurl.com/EMBObioinformaticscore>, taking place on-line on October 04-08, 2021. The course is aimed at newly appointed managers of bioinformatics core facilities, specially those with one foot in the research camp, or those managers willing to stabilize and grow their services. The training setting will provide an opportunity to learn from experienced core facilities managers on how to build a framework for the future development, resourcing, operation and impact assessment of your core services. By the end of the course, participants will have learned how to: * Identify the strengths and limitations of their core facility and prioritise areas for improvement * Design bioinformatics services and training using a user-centred approach and assuring best practices * Estimate the computing and human resources required to operate their facility effectively * Support users to manage their data, including sensitive data *Course applications will be open until June 30, including the option to apply for**registration fee waivers and childcare grants*: https://tinyurl.com/EMBObioinformaticscore <https://tinyurl.com/EMBObioinformaticscore> We would be grateful if you could spread the word within your contacts. Warm regards on behalf of the course organising committee: /Salvador Capella-Gutiérrez, BSC, INB/ELIXIR-ES/ /Cath Brooksbank, EMBL-EBI/ /Eva Alloza//, BSC, INB/ELIXIR-ES/ /Ezgi Karaca, IBG/ /Sheila Zúñiga, IIS INCLIVA/ -- Eva Alloza Training and Support Officer Spanish National Bioinformatics Institute (INB) mail: eva.alloza(a)bsc.es web: http://inb-elixir.es Barcelona Supercomputing Center (BSC-CNS) c/Jordi Girona, 31 - Torre Girona Building 08034 Barcelona (Spain) ------------------------------------------------------------------------ > > If you are having trouble reading this email, view the Web Version. > <https://enews.embo.org/?EventID=pc20-25> > > EMBO events <http://www.embo.org/events> > > EMBO Practical Course > > > Research to service: Planning and running a bioinformatics core facility > > 4–8 October 2021 | Virtual > > Interested in attending? Visit the website: > https://meetings.embo.org/event/20-bioinformatics-core > <https://meetings.embo.org/event/20-bioinformatics-core> > Register by: 30 June 2021 > > Find us on Facebook at > https://www.facebook.com/events/205555134724124 > <https://www.facebook.com/events/205555134724124> or join the > conversation on Twitter with #EMBObioinformaticscore > > EMBO <http://www.embo.org/> calendar > <http://events.embo.org/>facebook > <http://www.facebook.com/pages/EMBO-excellence-in-life-sciences/226032940763…>twitter > <https://twitter.com/emboevents>youtube > <http://www.youtube.com/user/EMBOcomm?feature=mhee> > > WARNING / LEGAL TEXT: This message is intended only for the use of the individual or entity to which it is addressed and may contain information which is privileged, confidential, proprietary, or exempt from disclosure under applicable law. If you are not the intended recipient or the person responsible for delivering the message to the intended recipient, you are strictly prohibited from disclosing, distributing, copying, or in any way using this message. If you have received this communication in error, please notify the sender and destroy and delete any copies you may have received. http://www.bsc.es/disclaimer <http://www.bsc.es/disclaimer> http://bsc.es/disclaimer

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Postdoc position Computational Biology: workflow development for single-cell data analysis in plants
by Klaas Vandepoele 09 Jun '21

09 Jun '21

Thanks to forward to potentially interested candidates! Apologies for double postings. -- We are looking for a junior postdoctoral researcher to work on computational workflow development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomics. This project is fully funded by UGent (Belgium) for 20 months (extension is possible) and ideally starts September 2021. The successful applicant will be part of the VIB-UGent [ http://bioinformatics.psb.ugent.be/cnb/ | Comparative Network Biology ] (Vandepoele) lab, an international, diverse, and vibrant group of research fellows at different career levels. Job description - Development of workflows to Retrieve, process and curate plant trait information from dedicated databases and literature (via text-mining and natural language processing). Process and store ontologies and gene-trait information in a relational database - Development and benchmarking of a command-line Nextflow pipeline to perform gene-trait discovery using single-cell RNA-Seq, network biology and curated plant trait data - Evaluation of the developed gene-trait discovery pipeline using newly generated single-cell datasets for different crop plants - Optional: interactions with (inter)national industrial/academic partners working on single-cell genomics and valorization. Your profile - You have a PhD in Bioinformatics, Computational biology or similar. - Having good programming (Python) and Linux skills is a must; experience with Nextflow pipelines is an asset. - You like and have experience with software/workflow/tool development. - Knowledge in plant or single-cell biology is a plus but not essential. - You are enthusiastic about computational tool development and want to learn more about applying computational biology for single-cell data analysis. - You have good communication skills and are proficient in English. Application Procedure If you are interested, please submit your application via [ https://career5.successfactors.eu/sfcareer/jobreqcareer?jobId=19229&company… | https://career5.successfactors.eu/sfcareer/jobreqcareer?jobId=19229&company… ] (clearly mentioning your computational skills and expertise in your CV). Deadline for applying: July 9th 2021. For more info, contact klaas.vandepoele(a)psb.vib-ugent.be Klaas Vandepoele - Professor Comparative Network Biology VIB-UGent Center for Plant Systems Biology Ghent University Technologiepark-Zwijnaarde 71 - 9052 Ghent - Belgium Tel. +32(0)9 331 38 22 [ http://www.psb.ugent.be/ | www.psb.ugent.be ] Genome editing, cutting-edge technology for a sustainable agriculture

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Helis Academy - Data Analysis and Stewardship related virtual events: Symposium 17 June and Company Visits 18 June
by Celia van Gelder 04 Jun '21

04 Jun '21

Dear all, On June 17-18, 2021: The Helis Academy <https://helisacademy.com/en>, with Data Analysis and Data Stewardship <https://helisacademy.com/en/data-analysis-stewardship> as one of its pillars, is organizing 2 half-day virtual events related to “Optimizing industry readiness in the The Netherlands and Flanders <https://helisacademy.com/en/closing-event/symposium>”. Day 1 (17 June 2021) contains a keynote of the CEO of Academic Transfer and interactive sessions about the Helis pillars. On Day 2 (18 June 2021) there are virtual company visits, a.o. to BASF and Ontoforce. The Data Analysis and Data Stewardship pillar of Helis is brought to you by VIB/ELIXIR-Belgium, TU/e, Maastricht University and DTL/ELIXIR-NL. We are looking forward to seeing you there! Best Celia -- Dr. Celia W.G. van Gelder Programme Manager DTL Learning Training Coordinator ELIXIR-NL ELIXIR Training Platform Leader tel. +31613375327 e-mail: celia.van.gelder(a)dtls.nl websites: https://www.dtls.nl/, https://www.elixir-europe.org/platforms/training skype: celia.van.gelder Office: DTL | Jaarbeurs Innovation Mile (JIM) | 6th floor Beatrixgebouw | Jaarbeursplein 6 | 3521 AL Utrecht Postal address: Postbus 8500 | 3503 RM Utrecht While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside yours.

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Galaxy Community Conference 2021 - Programme available - Early registration ends 8 June
by Kim DE RUYCK 04 Jun '21

04 Jun '21

Dear, The early registration deadline for the 2021 Galaxy Community Conference has been moved back to June 8 . This gives you more time to take advantage of the 50% discount off full registration prices, so make sure you sign up now so you don't miss out! Register [ https://www.vibconferences.be/events/gcc2021-virtual-edition#attendees | here ] . The [ https://gcc2021.sched.com/ | draft programme ] and the speakers are now also available online. Please bear in mind that the times are set for the Europe/Middle East/Africa - Asia/Pacific window, and that the same schedule will run 9 hours later for the Americas. The availability of the speakers for the Q&A session will depend on the time zone in which they are located. Posters and demo abstracts can still be [ https://www.vibconferences.be/events/gcc2021-virtual-edition#abstracts | submitted ] until the 14th of June . Feel free to distribute this message further in your network. We hope to meet you online! Kim De Ruyck on behalf of the GCC2021 Organizing Committee -- Kim De Ruyck PhD Coordinator ELIXIR Belgium VIB-UGent Center for Plant Systems Biology Technologiepark 71, 9052 Ghent, Belgium [ http://www.elixir-belgium.org/ | www.elixir-belgium.org ] [ https://twitter.com/ELIXIRnodeBE | @ELIXIRnodeBE ] [ http://eepurl.com/cl-xOX | Subscribe to our mailing list ]

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Fw: Vacancy Single Cell Core Project Manager
by Alexander Botzki 01 Jun '21

01 Jun '21

Dear colleagues, VIB is looking for a Single Cell Core Project Manager - please find more information at https://jobso.id/drc1 Best regards, Alex

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PhD position in artificial intelligence and metabolic engineering
by Thomas Abeel 01 Jun '21

01 Jun '21

Dear all, We are recruiting for a four year fully-paid PhD position in Computer Science and Artificial Intelligence at Delft University of Technology in collaboration with DSM. This project combines knowledge from metabolic engineering and artificial intelligence to improve development cycles of bio-based products and optimizing industrial-scale biobased processes This position is part of a group of 5 that cover the complete production scale from factory to microbes. https://www.tudelft.nl/over-tu-delft/werken-bij-tu-delft/vacatures/details?… #phd #artificialintelligence #metabolomics #tudelft kind regards, Thomas

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Scientist Bioinformatics, SkylineDx (Rotterdam)
by Domenico Bellomo 31 May '21

31 May '21

Dear community members, this is to inform you about an opening for a Scientist Bioinformatics at SkylineDx, in Rotterdam. Please, forward this email to suitable candidates in your network! The job As a Scientist Bioinformatics, you will perform research, feasibility and development work for molecular diagnostic assays, including microarrays and NGS, with the goal of improving existing assays and building new ones. You will be working with internationally renowned academic partners and SkylineDx’ multidisciplinary development team: scientists, lab technicians, clinical study team, software engineers, and the QA/RA department. Furthermore, you will contribute to the preparation of assay registration files, scientific publications, and presentations regarding the research you are performing. Together we ensure the validation and implementation of clinically relevant scientific discoveries into reliable medical diagnostic assays for diagnosis, prognosis and drug effectiveness prediction that will ultimately contribute to improved patient care. The company SkylineDx is a high-tech commercial stage biotech company headquartered in Rotterdam (the Netherlands) with a second office and certified laboratory in San Diego (CA, United States). We have a dedicated team with unique expertise to discover novel gene-based biomarkers and develop them into registered (companion) diagnostics, ready for commercialization. As an innovative company, we are continuously seeking ambitious colleagues with an academic background or working experience who share our ambition to build a world class diagnostics company that brings gene signature-based diagnostic tests to patients and their physicians. More info: https://www.skylinedx.com/jobs/scientist-bioinformatics Apply here: info(a)skylinedx.com<mailto:info@skylinedx.com> Best regards, Domenico Bellomo Domenico Bellomo Head of Bioinformatics [cid:image001.png@01D6F3E4.EF82D430] SkylineDx BV Brainpark II – Building XI Lichtenauerlaan 40 3062ME Rotterdam The Netherlands +31 (0)10 – 72 00 316 <http://skylinedx.com/> [cid:image002.png@01D6F3E4.EF82D430] <https://www.linkedin.com/company/skylinedx-bv/> [cid:image003.png@01D6F3E4.EF82D430] <https://twitter.com/skylinedx> [cid:image004.png@01D6F3E4.EF82D430] <https://twitter.com/skylinedx> <https://twitter.com/skylinedx> <https://twitter.com/skylinedx> <https://twitter.com/skylinedx>

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