- BBClist - maillist.psb.ugent.be

PhD position - lettuce bioinformatics
by Smit, Sandra 30 Mar '20

30 Mar '20

The Bioinformatics Group at Wageningen University is looking for a PhD student on lettuce pangenomics, as part of a large research program, LettuceKnow. Are you skilled in plant bioinformatics, interested in the combination of method development and genome analysis, and eager to collaborate with experimental plant biologists? This may be the right position for you. Full description at: https://www.wur.nl/en/vacancy/PhD-Student-Lettuce-Pangenomics.htm Kind regards, Sandra Smit ---- Dr. Sandra Smit Assistant Professor Bioinformatics, Wageningen University Email: Sandra.Smit(a)wur.nl<mailto:Sandra.Smit@wur.nl> ----

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Utrecht Uni vacancies: Bioinformatician; PhD student Viromics
by Bas E. Dutilh 28 Mar '20

28 Mar '20

Dear colleagues, I hope that everything is OK with you all in terms of health and working from home. Here, the work continues from home and I am currently looking for two new colleagues to strengthen the Utrecht University Metagenomics Group: 1) *Bioinformatician / Data Steward for Metagenomics*: https://www.uu.nl/en/organisation/working-at-utrecht-university/jobs/bioinf… 2) *PhD student Viral Metagenomics for One Health*: https://www.uu.nl/en/organisation/working-at-utrecht-university/jobs/phd-po… Please forward this message to potential candidates. You could also consider retweeting: Bioinformatician: https://twitter.com/BEDutilh/status/1243874743813648384 PhD student Viromics: https://twitter.com/BEDutilh/status/1243873143472652289 Kind regards, Bas -- Dr. Bas E. Dutilh <http://tbb.bio.uu.nl/dutilh> Metagenomics Group <https://wiki.ubc.uu.nl/mgx/> Theoretical Biology and Bioinformatics <http://tbb.bio.uu.nl/>, Utrecht University <https://www.uu.nl> Utrecht Bioinformatics Center <https://ubc.uu.nl/> +31 (0)30 253 4212

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Fwd: [ifb-all] 31 MAI : Direction du Hub de Bioinformatique et Biostatistique de l’Institut Pasteur
by Jacques van Helden 28 Mar '20

28 Mar '20

Dear colleagues, The Institut Pasteur in Paris is recruiting a Director for the Bioinformatics Hub. The application deadline has been postponed to May 31. Please don't hesitate to forward the following announcement. Best regards, Jacques van Helden Institut Français de Bioinformatique (IFB) http://www.france-bioinformatique.fr French node of the European ELIXIR bioinformatics infrastructure https://elixir-europe.org/about-us/who-we-are/nodes/france Jacques.vanHelden(a)france-bioinformatique.fr https://orcid.org/0000-0002-8799-8584 ============ Begin forwarded message: From: "Olivier GASCUEL" <olivier.gascuel(a)pasteur.fr> Subject: [ifb-all] 31 MAI : Direction du Hub de Bioinformatique et Biostatistique de l’Institut Pasteur Date: 28 March 2020 at 10:48:48 CET To: "ifb-all(a)groupes.france-bioinformatique.fr" <ifb-all(a)groupes.france-bioinformatique.fr> Reply-To: "Olivier GASCUEL" <olivier.gascuel(a)pasteur.fr> Bonjour à tous, J’espère que tout va bien pour vous et vos proches. Ce mail pour signaler que nous avons repoussé au 31 Mai la date limite pour déposer un dossier pour la Direction du Hub de l’Institut à Pasteur, cf. ci-dessous. A une « prochaine », bien amicalement, Olivier Gascuel MERCI DE DIFFUSER CE MAIL !! CHANGEMENT DE DATE LIMITE : 31 MAI 2020 Direction du Hub de Bioinformatique et Biostatistique de l’Institut Pasteur https://research.pasteur.fr/fr/team/bioinformatics-and-biostatistics-hub/ Le Hub de Bioinformatique et Biostatistique de l’Institut Pasteur, lancé en 2015, regroupe cinquante ingénieurs de recherche. Trente appartiennent au Hub Core et travaillent essentiellement sur les projets déposés par les Unités de recherche de l’institut. Vingt sont mis à disposition des Unités et Plateformes pour des périodes longues, mais conservent une affiliation à 20% au Hub pour la formation, les échanges et l’animation scientifique. Le Hub est une composante du Département de Biologie Computationnelle de l’Institut Pasteur (C3BI jusqu’en 2019, USR 3756 avec le CNRS - Directeur Olivier Gascuel). Le Hub est structuré en sept pôles experts (web, algorithmique et programmation, statistique, génomique, régulation, phylogénétique, biologie des systèmes). Les projets traités sont très divers en durée (de quelques jours à plusieurs années) comme en nature (analyses de données, bases de données, logiciels, interfaces et serveurs web, etc.). Près de 400 projets ont été traités par le Hub depuis sa création, ayant donné lieu à plus de 150 publications dont certaines dans Nature, Science ou PNAS. Le Hub a également une mission de formation (doctorants, chercheurs, réseau international) et il prend une part active dans la vie du Département de Biologie Computationnelle (séminaires, projets collaboratifs, retraite annuelle). L’Institut Pasteur recherche un/une Directeur/Directrice pour le Hub, avec un fort profil : * Haut niveau scientifique et reconnaissance internationale en bioinformatique et/ou biostatistique. * Expérience démontrée dans la gestion de plateformes de bioinformatique. * Capacité et motivation pour gérer l’ensemble du Hub et pour manager l’équipe (forte charge RH, recrutements, détachements, évolution des carrières, projets nombreux, facturation des services, enseignement et formation, animation et structuration scientifique...). * Capacité à jouer un rôle moteur dans l’évolution du Hub (veille technologique, formation permanente des personnels, transformations des modes de fonctionnement et de gestion des projets…). * Capacité à interagir avec les instances clefs de l’Institut Pasteur (Direction, DSI, Départements scientifiques, Plateformes, Centre Nationaux de Référence (CNR)...) et avec le Département de Biologie Computationnelle et ses Unités de recherche. * Capacité à assurer les liens avec les structures nationales (IFB, France Génomique, AVIESAN…) et internationales (ELIXIR) de bioinformatique. Au-delà de ces tâches et fonctions, le/la Directeur/Directrice du Hub sera encouragé/e à développer des activités propres de recherche et développement en relation étroite avec le campus et ses besoins, en mettant en place un nouveau pôle expert au sein du Hub. Seront notamment favorisés les thèmes liés : aux bases de données et de connaissance biomédicales ; à l’analyse, au partage, à la protection et la valorisation de ces données et connaissances ; à la science des données et à l’intelligence artificielle et leurs applications en biologie-santé. Il/elle aura sur ce thème une expertise reconnue et sera un point focal pour l’institut pour tout ce qui touche à la thématique. Il/elle assurera avec les ingénieurs de son pôle la mise en place de programmes, systèmes et infrastructures (en lien avec la DSI) bénéficiant au plus grand nombre au sein de l’institut et dans le réseau international. Pour candidater, envoyer à mona.ramadan(a)pasteur.fr avant le 31/05/2020 (document pdf unique, caractères 11 points minimum, interligne 14 points minimum) : (1) Résumé de la candidature, 1 page maximum ; (2) CV détaillé, 4 pages maximum ; (3) Motivations et projets pour le poste, 5 pages maximum ; (4) Liste de publications, brevets, logiciels et bases de données ; (5) Coordonnées de référents que nous pourrons contacter pour obtenir des avis sur la candidature. Contacts : mona.ramadan(a)pasteur.fr (RH), olivier.gascuel(a)pasteur.fr (Directeur Dpt.) MERCI DE DIFFUSER CE MAIL !!

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ECCB2020 - Submission deadlines extended for Highlights, Proceedings and Applications
by Eva Alloza 25 Mar '20

25 Mar '20

/- Apologies for multiple posting -/ Dear colleagues, *ECCB2020 submission deadlines ***have been extended *for the highlights, proceedings and applications tracks.* Please consider submitting your contributions and helping us sharing the below mailing among your contacts. Best regards, Eva Alloza, on behalf of the ECCB Organizing Commitee -- Eva Alloza Training and Support Officer Spanish National Bioinformatics Institute (INB) mail: eva.alloza(a)bsc.es phone: +34 934017139 web: http://inb-elixir.es Barcelona Supercomputing Center (BSC-CNS) c/Jordi Girona, 31 - Torre Girona Building 08034 Barcelona (Spain) ------------------------------------------------------------------------ Merge Doc View this email in your browser <http://mail.eventsairmail.com/ls/click?upn=uJGsKvA4CvNznJb2JMu3nKQ5Z-2FU08S…> <http://mail.eventsairmail.com/ls/click?upn=uJGsKvA4CvNznJb2JMu3nGV2ZgR2xugF…> Submission deadline extended! Call for Highlights, Proceedings and Applications If you had missed the previous deadline, now is the time to submit your contributions! <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> Highlights <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> Proceedings < https://eccb2020.info/call-for-proceedings/> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> Applications <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86GyIs3RJaME8…> ------------------------------------------------------------------------ <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…><http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> *Call for Posters* /Deadline: June 4th, 2020 / Remember! Call for posters is still open. You can send your poster until June 4th, 2020 -- Submit today <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86Bu8lyRk-2Bb…> www.eccb20.org <http://mail.eventsairmail.com/ls/click?upn=uJGsKvA4CvNznJb2JMu3nGV2ZgR2xugF…> <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86N7WOuYfIwMj…>#ECCB2020 <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86IZ8Vkhn8oIW…> TECHNICAL SECRETARIAT Ph. + 34 93 882 38 78 eccb2020(a)bcocongresos.com <mailto:eccb2020@bcocongresos.com> www.bcocongresos.com <http://mail.eventsairmail.com/ls/click?upn=vTVo9WAROVynOTbDemV86IZ8Vkhn8oIW…> View this email in your browser <http://mail.eventsairmail.com/ls/click?upn=uJGsKvA4CvNznJb2JMu3nKQ5Z-2FU08S…> http://bsc.es/disclaimer

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PhD position - lettuce bioinformatics
by Smit, Sandra 17 Mar '20

17 Mar '20

The Bioinformatics Group at Wageningen University is looking for a PhD student on lettuce pangenomics, as part of a large research program, LettuceKnow. Are you skilled in plant bioinformatics, interested in the combination of method development and genome analysis, and eager to collaborate with experimental plant biologists? This may be the right position for you. Full description at: https://www.wur.nl/en/vacancy/PhD-Student-Lettuce-Pangenomics.htm Kind regards, Sandra Smit ---- Dr. Sandra Smit Assistant Professor Bioinformatics, Wageningen University Email: Sandra.Smit(a)wur.nl<mailto:Sandra.Smit@wur.nl> ----

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Job offer: PhD position in Biostatistics
by madah.mehdi＠firalis.com 12 Mar '20

12 Mar '20

Hello, Firalis SA is pleased to offer a PhD position in Biostatistics in the framework of a European Helical project. For details, please consult the following link: https://www.indeed.fr/voir-emploi?cmp=FIRALIS-SA <https://www.indeed.fr/voir-emploi?cmp=FIRALIS-SA&t=PhD+Biostatistics&jk=549 7132ada52d0bd&sjdu=QwrRXKrqZ3CNX5W-O9jEvbVkB_Y3vAi78xHLeK-oBUO9GVaVqKtWEyzE3 vwuii3bCHzUTwGBWU2dRcPnIqBs72eFc0jwYajR7H3znEkAOjBxRi9-bDq5rPyRiKtKkx4QP9IM4 vRiY0QwCXSlHjThhQ&tk=1e36ukd7g9mhd800&adid=342126591&vjs=3> &t=PhD+Biostatistics&jk=5497132ada52d0bd&sjdu=QwrRXKrqZ3CNX5W-O9jEvbVkB_Y3vA i78xHLeK-oBUO9GVaVqKtWEyzE3vwuii3bCHzUTwGBWU2dRcPnIqBs72eFc0jwYajR7H3znEkAOj BxRi9-bDq5rPyRiKtKkx4QP9IM4vRiY0QwCXSlHjThhQ&tk=1e36ukd7g9mhd800&adid=342126 591&vjs=3 Kind regards Madah Mehdi

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vacancy for internship
by Richard Feron 12 Mar '20

12 Mar '20

Hi I am working in a start-up company that focuses on providing services for plant breeding industry. I am responsible for pipeline development and I have a nice opportunity for an intern to help me in that concerning bioinformatics. I would appreciate if you could distribute this opportunity in your network. Best regards Richard Feron Chief Scientific Officer [cid:image001.png@01D5F844.523D20A0] Sylviusweg 74 | 2333 BE Leiden | the Netherlands T +31 (0)71 2048 412 | M +31 (0)6 11106327 | E Richard.Feron(a)spadix.nl<mailto:Richard.Feron@spadix.nl>

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Online The Carpentries Instructor Training on May 19-20, 2020
by Celia van Gelder 09 Mar '20

09 Mar '20

FYI An *Online The Carpentries Instructor Training* is planned on May 19-20, 2020. The course is aimed at everyone who is interested in becoming a better teacher. In particular, this training is aimed at those who want to become Software Carpentry <https://software-carpentry.org/>, Library Carpentry <https://librarycarpentry.org/>, and Data Carpentry <http://datacarpentry.org/> Instructors, run workshops and contribute to The Carpentries training materials. More info: https://mkuzak.github.io/2020-05-19-TtT-online-elixir/ Please contact Mateusz Kuzak (in cc) if you need more information. Best Celia -- Dr. Celia W.G. van Gelder Programme Manager DTL Learning Training Coordinator ELIXIR-NL ELIXIR Training Platform Leader tel. +31613375327 e-mail: celia.van.gelder(a)dtls.nl websites: https://www.dtls.nl/, https://www.elixir-europe.org/platforms/training skype: celia.van.gelder Office: DTL | Jaarbeurs Innovation Mile (JIM) | 6th floor Beatrixgebouw | Jaarbeursplein 6 | 3521 AL Utrecht Postal address: Postbus 8500 | 3503 RM Utrecht While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside yours. -- Dr. Celia W.G. van Gelder Programme Manager DTL Learning Training Coordinator ELIXIR-NL ELIXIR Training Platform Leader tel. +31613375327 e-mail: celia.van.gelder(a)dtls.nl websites: https://www.dtls.nl/, https://www.elixir-europe.org/platforms/training skype: celia.van.gelder Office: DTL | Jaarbeurs Innovation Mile (JIM) | 6th floor Beatrixgebouw | Jaarbeursplein 6 | 3521 AL Utrecht Postal address: Postbus 8500 | 3503 RM Utrecht While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside yours. -- Dr. Celia W.G. van Gelder Programme Manager DTL Learning Training Coordinator ELIXIR-NL ELIXIR Training Platform Leader tel. +31613375327 e-mail: celia.van.gelder(a)dtls.nl websites: https://www.dtls.nl/, https://www.elixir-europe.org/platforms/training skype: celia.van.gelder Office: DTL | Jaarbeurs Innovation Mile (JIM) | 6th floor Beatrixgebouw | Jaarbeursplein 6 | 3521 AL Utrecht Postal address: Postbus 8500 | 3503 RM Utrecht While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside yours.

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Fwd: [rsg-belgium] RSG Belgium Symposium + Workshop on Data Visualisation | 05/05/2020, UCLouvain
by Pieter Moris 06 Mar '20

06 Mar '20

-------- Forwarded Message -------- Subject: [rsg-belgium] RSG Belgium Symposium + Workshop on Data Visualisation | 05/05/2020, UCLouvain Date: Thu, 05 Mar 2020 16:20:02 +0100 From: Sofia Papadimitriou <sofiapapad.bio(a)gmail.com> Reply-To: Sofia Papadimitriou <sofiapapad.bio(a)gmail.com> To: rsg-belgium(a)supersympa.ua.ac.be Dear colleagues, RSG Belgium, the regional student group of the International Society for Computational Biology, is organising the annual*Student Symposium in bioinformatics and computational biology* on *5^th May 2020 *at UCLouvain, in Brussels. The main goal of this event is to provide a forum for young researchers and students in bioinformatics where they can present their work, get updated about current research topics in Belgium and network with their peers. We are happy to have prof. dr. *Laurent Gatto* (de Duve Institute) give a keynote lecture on research reproducibility. We are also excited to announce that we will accompany the symposium in the morning with a *workshop* by prof. dr. *Jan Aerts* (Data Science Institute at UHasselt), who will walk us through the most important concepts in *data visualisation for biological data* and provide pen&paper design exercises. The event is free for all participants (including a lunch break), but registration for the workshop and the symposium is *_required_* through this form: https://bit.ly/2wssYT5. The registration deadline is *20^th * *April*. If you would like to present your work either as an oral presentation or a poster, the abstract submission deadline (through the same form) is *April 5^th *. You can find all relevant information about the event and updates on our website: http://www.rsg-belgium.iscbsc.org/event/student-symposium/student-symposium…. We are looking forward to seeing you at UCLouvain! Best regards, Sofia Papadimitriou on behalf of the RSG Belgium board team

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Vacancy for bioinformatician at Princess Máxima Center for Pediatric Oncology (Utrecht, Netherlands)
by Meister, M.T. 05 Mar '20

05 Mar '20

Dear colleagues, Our group at the Princess Máxima Center for Pediatric Oncology (Utrecht, Netherlands) is looking for a bioinformatician to perform genomic analyses of pediatric sarcomas: https://werkenbijprinsesmaximacentrum.nl/vacature/bioinformatician-genomic-… We would be pleased if you could share this vacancy via the Benelux Bioinformatics mailing list. If you have any further questions, do not hesitate to contact me. With kind regards, Michael Meister

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