- BBClist - maillist.psb.ugent.be

Two open vacancies bioinformatics @Sciensano
by BeNeLux bioinformaticians forum 28 Dec '22

28 Dec '22

Dear all, The Bioinformatics Platform at the Belgian Institute of Health (www.sciensano.be<http://www.sciensano.be>) currently has two vacancies for a bioinformatician or a computer scientist: - To work on setting up services and infrastructure within the context of the Genomics Data Infrastructure project (https://jobs.sciensano.be/content/jobpage.asp?a=DETAIL&jdkid=1029&l=DUTCH) - To work on setting up solutions and applications to enhance future pathogen outbreak responses (https://jobs.sciensano.be/content/jobpage.asp?a=DETAIL&jdkid=1056&l=DUTCH) Applications are possible using the links above. Sincerely, K Kevin Vanneste, PhD Senior scientist - Responsible Bioinformatics Platform Transversal activities in Applied Genomics (TAG) T + 32 2 642 50 65 [cid:image001.jpg@01D4595B.6D6E05D0] Rue Juliette Wytsmanstraat 14 * 1050 Brussels www.sciensano.be<http://www.sciensano.be/> P Please consider the environment before printing this e-mail

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JUNIOR LECTURER VU/UvA MASTER’S PROGRAMME BIOINFORMATICS AND SYSTEMS BIOLOGY JD
by BeNeLux bioinformaticians forum 23 Dec '22

23 Dec '22

Dear Reader, There is a Junior Lecturer position available at the VU/UvA for teaching in Bioinformatics & Systems Biology Check out the VU website : https://workingat.vu.nl/ad/junior-lecturer-juniordocent-masters-programme-b… [https://workingat.vu.nl/api/file/get/54a4a5e6-ec7f-44b4-801c-997f0e34793f]<https://workingat.vu.nl/ad/junior-lecturer-juniordocent-masters-programme-b…> Junior lecturer (juniordocent) Master’s Programme Bioinformatics and Systems Biology JD - >Working at VU<https://workingat.vu.nl/ad/junior-lecturer-juniordocent-masters-programme-b…> We are looking for a colleague who is passionate about education and dedicated to support the VU/UvA joint degree Master’s programme for Bioinformatics and Systems Biology<https://vu.nl/en/education/master/bioinformatics-and-systems-biology> Please apply... workingat.vu.nl Kind Regards, Marten Dr. Marten Postma Assistant Professor Chair Examinations Board BSc BMW/MSc BMS Leerlijncoördinator Omics en Systeembiologie BSc BMW Track coordinator Systems Biology MSc BioSB JD Member Admission Committee MSc BioSB JD Vice-chair Curriculum Committee MSc BioSB JD Member SILS Educational Committee (SEC) zoom : https://uva-live.zoom.us/j/2612815610 Room C2.102 (SILS) Swammerdam Institute for Life Sciences (SILS) University of Amsterdam (uVA) Science Park 904 1098 XH Amsterdam The Netherlands tel : +31 20 525 6225 e-mail : M.Postma(a)uva.nl<mailto:M.Postma@uva.nl> website : http://www.martenpostma.nl/science/

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Job Advertisement Bioinformatician (f/m/d)
by BeNeLux bioinformaticians forum 23 Dec '22

23 Dec '22

Dear Madams & Sirs, The Max Planck Institute for Multidisciplinary Sciences in Göttingen, Germany, is a leading international research institute of exceptional scientific breadth. With more than 40 research groups and some 1,000 employees from over 50 nations, it is the largest institute of the Max Planck Society. The department of Tissue Dynamics and Regeneration (Dr. Jochen Rink) invites applications for a position as Bioinformatician (f/m/d) You will find the complete job description as attachment to this email with a request to publish it in your department/division. Should you have any questions or need further information, please do not hesitate to contact me. We thank you in advance for your support and wish you a happy holiday season. Mit freundlichen Grüßen / Best Regards Martina Lingl Team Assistant Department of Tissue Dynamics and Regeneration Max-Planck-Institute for Multidisciplinary Sciences Am Faßberg 11, 37077 Göttingen, Germany Phone: ++49 551 201 26100 Fax: ++49 551 201 2705 office.rink(a)mpinat.mpg.de<mailto:office.rink@mpinat.mpg.de> martina.lingl(a)mpinat.mpg.de<mailto:martina.lingl@mpinat.mpg.de>

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vacature Bioinformaticus (BSc, MSc), humane genetica
by BeNeLux bioinformaticians forum 22 Dec '22

22 Dec '22

Hi all, I have a vacancy for a bioinformatician within my team! https://werkenbijumcutrecht.nl/vacatures/it/bioinformaticus-wetenschappelij… Enjoy the holidays! Met vriendelijke groet, Hanneke van Deutekom [Universitair Medisch Centrum Utrecht] Hoofd Bioinformatica | Divisie Laboratoria, Apotheek en Biomedische Genetica, Genoomdiagnostiek Universitair Medisch Centrum Utrecht | Kamernummer STR.0.308 | Huispostnummer STR.1.305 T: +31 88 75 68116 M +31 6 311 179 26| www.umcutrecht.nl<http://www.umcutrecht.nl> | Werkdagen: ma,di,do,vr ________________________________ De informatie opgenomen in dit bericht kan vertrouwelijk zijn en is uitsluitend bestemd voor de geadresseerde. Indien u dit bericht onterecht ontvangt, wordt u verzocht de inhoud niet te gebruiken en de afzender direct te informeren door het bericht te retourneren. Het Universitair Medisch Centrum Utrecht is een publiekrechtelijke rechtspersoon in de zin van de W.H.W. (Wet Hoger Onderwijs en Wetenschappelijk Onderzoek) en staat geregistreerd bij de Kamer van Koophandel voor Midden-Nederland onder nr. 30244197. P Denk s.v.p. aan het milieu voor u deze e-mail afdrukt.

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2023 is in around the corner! 🍾 Check what is coming up.
by BeNeLux bioinformaticians forum 21 Dec '22

21 Dec '22

[cid:image001.png@01D91546.6FFD3720] [signature_2008044598] 2023 is in around the corner! 🍾 Check what is coming up. Dear colleagues, Coming up in 2023 we are offering trainings that can help you with different stages of the Research Data Management (RDM) of your project, you can start keeping track of versions of your code and writing by following introduction to Git & GitHub. And you can make your analysis reproducible using Docker (and Singularity) for reproducible and automated data analysis. Without forgetting that you can have scalable and reproducible pipelines built with Nextflow for reproducible and automated data analysis. Find bellow the details you need to join us in any of the coming up trainings. Don’t forget to subscribe! Introduction to Git & GitHub ____________________________________________________________________________________ 8th February 2023 – Brussels Face to Face training This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers Registration and info: Link for Git & GitHub<https://training.vib.be/all-trainings/introduction-git-github-5> Docker (and Singularity) for reproducible and automated data analysis ____________________________________________________________________________________ 13th and 14th March 2023 – Leuven Face to Face training The course will give an introduction to containers (Docker & Singularity) which are great components to achieve portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, Singularity will be highlighted as well. Registration and info: Docker and reproducibility<https://training.vib.be/all-trainings/nextflow-reproducible-and-automated-d…> Nextflow for reproducible and automated data analysis ____________________________________________________________________________________ 30th and 31st March 2023 – Leuven Face to Face training You will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language. Registration and info: NextFlow automated pipeline<https://training.vib.be/all-trainings/nextflow-reproducible-and-automated-d…> Kind regards, Bruna Piereck ELIXIR Belgium Training Coordinator VIB Bioinformatics Core Technologiepark-Zwijnaarde 75 9052 Zwijnaarde, Belgium tel +32 0497 2988 73 [cid:image001.png@01D91546.6FFD3720][signature_2008044598]

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Postdoc/Project Manager position available | VIB Single Cell Core 🎄
by BeNeLux bioinformaticians forum 20 Dec '22

20 Dec '22

Dear colleagues, The VIB Single Cell Core is expanding, we are looking for a new colleague to support the follow-up of ongoing projects and implement novel methods where possible. Check out the vacancy via this link<https://jobs.vib.be/j/53475/single-cell-expert-project-manager-at-vib-singl…>. Thank you for forwarding this job advertisement to potential candidates in your network! [cid:part1.yU552hZ6.KG0khdI8@kuleuven.be]Happy Holidays from the Single Cell Core! https://jobs.vib.be/j/53475/single-cell-expert-project-manager-at-vib-singl… -- Niels Vandamme | Head of VIB Single Cell Core VIB - Vlaams Instituut voor Biotechnologie KU Leuven | Campus Gasthuisberg O&N5 - Herestraat 49 box 602, 3000 Leuven Niels.Vandamme(a)kuleuven.be<mailto:Niels.Vandamme@kuleuven.be>

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Post-doctoral position: plant single-cell bioinformatics
by Michiel Van Bel 20 Dec '22

20 Dec '22

Post-doctoral assistant → Apply until 24/01/2023 (DD/MM/YYYY) 23:59 (Brussels time) → Faculty of Sciences → Department WE09 - Plant Biotechnology and Bioinformatics → AAP temporary appointment - 100% → Number of openings: 1 → Reference number: 202210/WE09/DA/032 ABOUT GHENT UNIVERSITY Ghent University is a world of its own. Employing more than 8,000 people, it is actively involved in education and research, management and administration, and technical and social services on a daily basis. It is one of the largest, most exciting employers in the area and offers great career opportunities. With each of its 11 faculties and more than 100 departments offering state-of-the-art study programmes that are grounded in research in a wide range of academic fields, Ghent University is a logical choice for its employees as well as its students. YOUR TASKS * At least 70% of your assignment will be spent on academic research in the research group [ https://www.psb.ugent.be/index.php/groups/comparative_network_biology | Comparative Network Biology ] of the department [ https://www.psb.ugent.be/ | Plant Biotechnology and Bioinformatics ] ; this in the following domains : bioinformatics, computational biology, systems biology, machine learning and single-cell data analysis. * You will assist in teaching activities at Bachelor’s or Master’s level. More specifically, you will help with practical classes, seminars and master’s projects of courses related to bioinformatics and systems biology that are taught in the framework of the Bachelor and Master in Biochemistry and Biotechnology and the Master in Bioinformatics. * You will counsel Master’s students in their exercises, work placement and Master’s dissertation. * You will counsel doctoral students. * You will assist in the internal and external services of the department, amongst others as a point of contact for students following the BIS (bioinformatics and systems biology) option of the Master in Biochemistry and Biotechnology and for students of the Master in Bioinformatics. You will act as a representative for the field of bioinformatics and systems biology during information sessions. WHAT WE ARE LOOKING FOR You hold a doctoral degree (Doctor of Science: Bioinformatics, Doctor of Science: Biochemistry, Doctor of Science: Biochemistry and Biotechnology, Doctor of Bioscience Engineering, or a subject considered relevant by the selection committee). For diplomas awarded outside the European Union, a certificate of equivalence (NARIC) must be submitted. The degree requirements need to be fulfilled at the start of your appointment. * You have already conducted research within the field of computational biology, machine learning or systems biology in plants (experience with programming and Unix-like command-line usage is essential). * You have distinguished yourself as a promising researcher during your doctorate. * You are profoundly interested in coaching students in the Bachelor’s, Master’s and/or Advanced Master’s programmes. * You can present relevant scientific publications in (inter)national peer-reviewed academic journals that are widely disseminated. * You have good communication and didactic skills. * You are fluent in written and spoken English; knowledge of Dutch is a plus. WHAT WE OFFER YOU We offer you a temporary appointment of 3 years. A second appointment of up to 3 years can follow, subject to a favourable evaluation of the first term. * Even if you have already been appointed earlier (whether or not at another university and whether or not in the same field of discipline) in a first term of up to three years, you can apply. * The second appointment does not have to be immediately connected to a first term. * Your appointment will start on 1 April 2023 at the earliest. * Your remuneration will be determined according to salary scale AAP5. [ https://www.ugent.be/nl/vacatures/salarisschalen/aapvwpeas3.htm | More information about our salary scales ] . * All Ghent University staff members enjoy a number of benefits, such as a wide range of training and education opportunities, 36 days of paid leave, bicycle commuting reimbursement, ecocheques, etc. [ http://www.ugent.be/nl/vacatures/personeelsvoordelen.htm | A complete overview of all our fringe benefits ] (in Dutch). INTERESTED? Apply online through the e-recruitment system before the application deadline (see above). We do not accept late applications or applications that are not sent through the online system. Your application must include the following documents: In the field ‘Cv’: your cv and an overview of your relevant scientific (merged into one pdf file). * In the field ‘Cover letter’: your application letter in pdf format. * In the field ‘Diploma’: a transcript of the required degree (if already in your possession). If you have a foreign diploma in a language other than our national languages (Dutch, French or German) or English, please add a translation in one of the mentioned languages. * In the field ‘Certificate of equivalence’: only for diplomas awarded outside the European Union a certificate of equivalence (NARIC) must be submitted. (This can be requested via www.naricvlaanderen.be/en ). For diplomas awarded in the UK before January 31st of 2020, a certificate of equivalence is not required. Note that the maximum file size for each field is 10 MB. As Ghent University maintains an equal opportunities and diversity policy, everyone is encouraged to apply for this position. MORE INFORMATION For more information about this vacancy, please contact Prof. Klaas Vandepoele ( [ mailto:Klaas.Vandepoele@UGent.be | Klaas.Vandepoele(a)UGent.be ] , +32 (0)9/331 38 22) or Prof. Yves Van de Peer ( [ mailto:Yves.VandePeer@UGent.be | Yves.VandePeer(a)UGent.be ] , +32 (0)9/331 38 07) Do you have a question regarding the online application process? Please read our [ https://www.ugent.be/en/work/faq-applying-online.htm | FAQ ] . [ https://career5.successfactors.eu/career?company=C0000956575P&site=VjItRG9O… | Apply to this job now... ]

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PhD position in bioinformatics available within Marie Sklodowska-Curie EU Butterfly consortium
by Kemmeren-2, P.P.C.W. (Patrick) 20 Dec '22

20 Dec '22

Dear all, Within the Marie Sklodowska-Curie EU funded Butterfly consortium dedicated to advancing pediatric oncology research, we have a PhD position available in bioinformatics either focused on understanding regulatory networks underlying genetic interactions or untangling structural variation in pediatric cancer. For details on the two projects, please go to: https://maximabutterfly.com/vacancies/exploiting-genetic-interactions-for-m… https://maximabutterfly.com/vacancies/untangling-somatic-structural-variati… Want to be part of our research group and join the international consortium of 28 PhD students, then apply before January 31st using the website indicated below. More information, also about other bioinformatics research projects can be found below as well. https://maximabutterfly.com/ Patrick -- Patrick Kemmeren, PhD Principal Investigator & head Big Data Core Princess Máxima Center Associate Professor UMC Utrecht T +31 (0)88 972 90 00 | M +31 (0)6 53 11 25 53 [signature_1282979978] [signature_1603814400] Princess Máxima Center for Pediatric Oncology Heidelberglaan 25 | 3584 CS Utrecht | T +31 (0)88 972 90 00 | > Website<https://research.prinsesmaximacentrum.nl/en/research-groups/kemmeren-group>

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Bioinformatician or computational biologist vacancy in leukemia research
by Kemmeren-2, P.P.C.W. (Patrick) 20 Dec '22

20 Dec '22

Dear all, On behalf of Monique den Boer, research group leader at the Princess Máxima Center for Pediatric Oncology, I’m drawing your attention to a vacancy for a bioinformatician or computational biologist who would like to work on multi-omics data integration within translational, clinically relevant leukemia research. The position is still open, so if you are interested, please apply through: https://werkenbijprinsesmaximacentrum.nl/vacature/phd-den-boer-group-bioinf… Patrick -- Patrick Kemmeren, PhD Principal Investigator & head Big Data Core Princess Máxima Center Associate Professor UMC Utrecht T +31 (0)88 972 90 00 | M +31 (0)6 53 11 25 53 [signature_1572033080] [signature_2722581334] Princess Máxima Center for Pediatric Oncology Heidelberglaan 25 | 3584 CS Utrecht | T +31 (0)88 972 90 00 | > Website<https://research.prinsesmaximacentrum.nl/en/research-groups/kemmeren-group>

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[BCC] Registration open for: 'Constraint-based modeling: Introduction and advanced topics' 13-17 Feb 2023 - a course in the BioSB series
by Petra Aarnoutse (DTL) 19 Dec '22

19 Dec '22

Dear Colleagues, We are pleased to invite you to the first BioSB course of the year 2023: Constraint-based modeling: Introduction and Advanced Topics When: 13 - 17 Feb 2023 Where: Wageningen, the Netherlands Organizers: BioSB Research school,in collaboration with Wageningen University and Research (Prof. dr. Maria Suarez Diez), and Maastricht University (Prof. dr. Marian Breuer) Website: Constraint-based modeling: Introduction and advanced topics - Dutch Techcentre for Life Sciences (dtls.nl) <https://www.dtls.nl/courses/constraint-based-modeling-introduction-and-adva…> Registration: BioSB course Constraint based modeling 2023 - Register (aanmelder.nl) <https://www.aanmelder.nl/constraint-modeling-2023/subscribe> This course will introduce computational modeling of large (genome-scale) metabolic reaction networks through a scalable framework known as constraint-based modeling. Emphasis will be on use in both biotechnology and systems biomedicine. Main topics are fundamental contraint-based modeling methods, omics data integration, multi-scale modeling and microbial community modeling. The course combines theoretical lectures with tutorial exercises and computational exercises in Python. Target Audience Constraint-based modeling is a rapidly growing field that is being used in both fundamental and applied research and biotechnology. It sits at the intersection between quantitative modeling, bioinformatics and cellular physiology, and as such, is an example of systems biology at work. While participants would benefit from some knowledge of either quantitative modeling, bioinformatics or metabolism, this is not required. We are happy to welcome, for example, scientists working in a laboratory and wanting to learn more about building or using genome-scale metabolic models, as well as those who have used some basic COBRA methodologies, but want to know how else it can be applied to their research. More information can be found on the website. <https://www.dtls.nl/courses/constraint-based-modeling-introduction-and-adva…> We look forward to meeting you (again) in 2023! Best regards, Petra Aarnoutse @ BioSB research school <https://www.dtls.nl/biosb/> --

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