- BBClist - maillist.psb.ugent.be

FW: sincellTE 2022
by Alexander Botzki 13 Jul '21

13 Jul '21

Dear all, I would like to share with you a single-cell training we are organizing in Roscoff (France) in early 2022 with different partners (including institut Pasteur / Curie) This training is dedicated to bioinformaticians/scientists with a first experience in single data analysis (and familiar with unix/R). This year, we will try to focus on multi-omics and spatial transcriptomics analysis. Feel free to share this training in your different network ! All the best Nicolas Training : Single-Cell : Transcriptomics, Spatial and Multi-Omics (sincellTE) Date : 9 January 2022 - 14 January 2022 Place : Roscoff, France Deadline pre-registration: 15th September 2021 This one-week class focuses on the large-scale study of heterogeneity across individual cells from the genomic, transcriptomic and epigenomic points of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce comes with novel methodological challenges for the analysis. In this regard, specific bioinformatics and statistical methods have been developed in order to extract robust information. This course is directed towards engineers and researchers who regularly need to undertake single-cell data analysis as well as PhD Student and Post Doc in computational biology or bioinformatics that are interested in the development of methods and pipelines for highly dimensional single-cell data analysis. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics. Requirements : Participants must have prior experience on NGS data analysis with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material. It is not necessary to have personal single-cell data to analyse. All information and pre-registration: https://www.france-bioinformatique.fr/formation/single-cell-2022/ -- Nicolas Servant, PhD co-Director of the Bioinformatics core facility Bioinformatics & Biostatistics Analysis Team Institut Curie INSERM U900 - Institut Curie - Mines ParisTech 26, rue d'Ulm - 75248 Paris Cedex 05 - FRANCE Nicolas.Servant(a)curie.fr<mailto:Nicolas.Servant@curie.fr> +331 56 24 69 85

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BSC: Life Sciences vacancy
by BSC Human Resources 13 Jul '21

13 Jul '21

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - PhD student in Computer Science and Bioinformatics (R1). Deadline: 31 August, 2021 Link here <https://www.bsc.es/join-us/fellowships/25121lsiconbir1> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/>

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Erasmus Summer Programme 2021 - Advanced Course on Genome-Wide Association Studies
by Vid Prijatelj 08 Jul '21

08 Jul '21

To all interested, This year's revamped edition is offered completely online, under the organizational arm of the programme director of Genomic & Molecular Epidemiology programme at NIHES - prof. dr. Fernando Rivadeneira. View this email in your browser <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailchi.m…> Genome-wide association studies [ESP74] *Do you have a study that has been or will soon be profiled for GWAS? This course is perfect if you want to receive state-of-the-art training in how to perform the statistical analysis of a GWAS yourself.* The course Genome-wide association studies (GWAS) constitute a powerful approach to investigate the genetic basis of complex traits and disorders. The course consists of virtual lectures providing a conceptual framework on crucial aspects of quality control, genotype imputation, methods to detect and correct for stratification, meta-analysis and genomic annotation of GWAS signals. *Register here* <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…> [image: Twitter] <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…> [image: Facebook] <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…> [image: LinkedIn] <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…> [image: YouTube] <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…> [image: Website] <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…> *Copyright © 2021 NIHES, All rights reserved.* test *Our mailing address is:* NIHES Postbus 2040 ROTTERDAM, Zuid-Holland 3000 CA Netherlands Add us to your address book <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fnihes.us2…>

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Bioinformatician MSc/PhD
by Hanneke van Deutekom 06 Jul '21

06 Jul '21

Hi all, I have a vacancy in my team; https://www.werkenbijumcutrecht.nl/international/vacancies/Pages/bioinforma… The Genetics department is in search of an enthusiastic, creative bioinformatician to strengthen their bioinformatics team. Patient care is central to the Genetics department. Therefore, we constantly innovate. Bioinformatics has a crucial role in this innovation. Within the Genetics department, the bioinformatic challenges range from the detection of genetic variants using different techniques (e.g. WGS, RNAseq, and long-read sequencing) to advanced data analysis and interpretation. We offer an innovative, multidisciplinary environment in which you will work as an independent professional on the development of a new standard in genetic care. We are in need of a talent who can develop software that integrates WGS data and RNA sequencing data to interpret genetic variants. You will contribute to shape the genetic care of the future! Best wishes Hanneke van Deutekom Head of Bioinformatics, Genome Diagnostics, Genetics, UMC Utrecht

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Bioinformatics position at NIOO-KNAW (Wageningen, The Netherlands)
by Mattias de Hollander 06 Jul '21

06 Jul '21

The Netherlands Institute of Ecology (NIOO-KNAW) offers the position of a *bioinformatician*. In this role you will give support to researchers in each of the four NIOO-KNAW research departments. Projects are very diverse, ranging from bacteria and fungi to plants, insects, birds and genetic material recovered directly from soil or other environmental samples. Your task is to interact with researchers, ICT staff and data stewards to facilitate researchers in performing their bioinformatics analyses. This includes tutoring, helping with data management, building pipelines, providing training, advising researchers and system administration tasks. You will not do research yourself. The position is part of a small, dedicated team that coordinates all aspects of bioinformatics support. You will be part of a team with another bioinformatician to give support and advice to researchers during the complete research cycle, develop and give (carpentry) workshops, teaching coding and data science skills to researchers, develop and contribute to existing open-source workflows and learn others how to use them, unlock an infrastructure consisting of several Linux servers including several web-portals to researchers, and act as a knowledge hub for bioinformatics within the institute by providing documentation and training material. *More info, contact & application details*: https://www.academictransfer.com/en/302432/bioinformatician-nioo-knaw-wagen… *Application deadline: *15 August

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postdoc in machine learning for phenotypic drug design
by Pedro BALLESTER 04 Jul '21

04 Jul '21

Dear all, A second postdoc is also available in my group. Further information and how to apply at https://academicpositions.com/ad/aix-marseille-universite/2021/postdoc-in-m… Best wishes Pedro -- (c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c) Dr. Pedro J. Ballester Group Leader at the Cancer Research Centre of Marseille (CRCM) Research scientist at INSERM https://publons.com/researcher/975063/pedro-j-ballester/ (c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)

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postdoc in machine learning for structure-based drug design
by Pedro BALLESTER 04 Jul '21

04 Jul '21

Dear all, This postdoc is available in my group. Further information and how to apply at https://academicpositions.com/ad/aix-marseille-universite/2021/postdoc-in-m… Best wishes Pedro -- (c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c) Dr. Pedro J. Ballester Group Leader at the Cancer Research Centre of Marseille (CRCM) Research scientist at INSERM https://publons.com/researcher/975063/pedro-j-ballester/ (c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)¤(c)

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FW: 2 PhD positions in Norwich, UK in metagenomics
by Falk Hildebrand (QIB) 30 Jun '21

30 Jun '21

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Vacancy for a PhD-student
by L.M. Zandwijk - Hollestein 30 Jun '21

30 Jun '21

Dear Sir/Madam, We have a vacancy for a PhD-student at the Dermatology and Pathology department of the Erasmus MC Cancer Institute in Rotterdam for a project about metastasis of melanoma. The project includes analyses of histopathological images and DNA sequencing data. Could you spread this vacancy through the bbc mailinglist? I also attached the English vacancy, as the link below is in Dutch. https://www.werkenbijerasmusmc.nl/vacature/53541/phd-student-voor-integrati…<https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.werke…> Best regards, Dr. L.M. (Loes) Hollestein Epidemiologist Dermatology [Erasmus MC] P.O. Box 2040, 3000 CA Rotterdam, The Netherlands, internal postal address NA-501 Visiting address: office NA-501, Dr.Molewaterplein 40, 3015 GD Rotterdam, The Netherlands Email l.hollestein(a)erasmusmc.nl<mailto:l.hollestein@erasmusmc.nl> | Telephone +31 6 500 324 07 www.erasmusmc.nl<http://www.erasmusmc.nl> [Twitter]<https://twitter.com/erasmusmcintl> [YouTube] <http://www.erasmusmc.nl/youtube> Presence: Monday, Tuesday, Wednesday, Thursday

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Phd opprtunities @University of Lille and INRIA
by El-ghazali Talbi 29 Jun '21

29 Jun '21

*** Re-Posting - Please help distribute it to interested once **** 2 PhD Opportunity in optimization, metaheuristics and deep learning - Deadline July 30, 2021 1. "Multi-criteria design and optimization of deep learning models: Application to embedded systems". Collaboration with IRT-SystemX Paris Saclay. See the linkhttps://www.irt-systemx.fr/recrutement/multi-criteria-automated-design-and-optimization-of-deep-neural-networks/ for more details. 2. "Optimization of deep learning models for spacio-temporel prediction", Collaboration with EDF Paris Saclay. contact: Prof. El-Ghazali TALBI, e-mail:el-ghazali.talbi@univ-lille.fr -- ********************************************************************** META'2021 International Conference on Metaheuristics and Nature Inspired Computing 27-30 Oct 2021, Marrakech, Morocco http://meta2021.sciencesconf.org *********************************************************************** ********************************************************************** OLA'2022 International Conference on Optimization and Learning July 2022, Sicilia, Italy *********************************************************************** Prof. El-ghazali TALBI Polytech'Lille, University Lille - INRIA CRISTAL - CNRS guide2research.com

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