- BBClist - maillist.psb.ugent.be

two staff positions computational biology
by Berend Snel 15 Jan '21

15 Jan '21

Dear Computational Biologists, On behalf of Prof. dr. Rob de Boer I would like to inform you that Theoretical Biology and Bioinformatics Utrecht is advertising two staff positions. See tbb.bio.uu.nl/positions.html One is a tenure track assistant/associate professor position Theoretical Biology. The other is a teaching position (for 2 years) to help set up a new Bachelor program Molecular and Biophysical Life Sciences. best wishes. Berend Snel

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BSC: Life Sciences vacancy
by BSC Human Resources 15 Jan '21

15 Jan '21

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - Web developer and technician - Text Mining (RE1). Deadline: 28 February, 2021 Link here <https://www.bsc.es/join-us/job-opportunities/1320lstmre1> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/> http://bsc.es/disclaimer

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BSC: Life Sciences vacancy
by BSC Human Resources 13 Jan '21

13 Jan '21

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - Text Mining Research Engineer (RE2). Deadline: 28 February, 2021 Link here <https://www.bsc.es/join-us/job-opportunities/1020lstmre2> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/> http://bsc.es/disclaimer

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Extended deadline OLA'2021 @Sicilia Italy
by El-ghazali Talbi 13 Jan '21

13 Jan '21

Apologies for cross-posting. Appreciate if you can distribute this CFP to your network. **************************************************************************************** OLA'2021 International Conference on Optimization and Learning 21-23 June 2021 Catania (Sicilia), Italy http://ola2021.sciencesconf.org/ **************************************************************************************** OLA is a conference focusing on the future challenges of optimization and learning methods and their applications. The conference OLA'2021 will provide an opportunity to the international research community in optimization and learning to discuss recent research results and to develop new ideas and collaborations in a friendly and relaxed atmosphere. OLA'2021 welcomes presentations that cover any aspects of optimization and learning research such as big optimization and learning, optimization for learning, learning for optimization, optimization and learning under uncertainty, deep learning, new high-impact applications, parameter tuning, 4th industrial revolution, computer vision, hybridization issues, optimization-simulation, meta-modeling, high-performance computing, parallel and distributed optimization and learning, surrogate modeling, multi-objective optimization ... Submission papers: We will accept two different types of submissions: - S1: Extended abstracts of work-in-progress and position papers of a maximum of 3 pages - S2: Original research contributions of a maximum of 10 pages Important dates: =============== Paper submission deadline Extended to Feb 05, 2021 Notification of acceptance March 24, 2021 Proceedings: Accepted papers in categories S1 and S2 will be published in the proceedings. A SCOPUS and DBLP indexed Springer book will be published for accepted long papers. All proceedings will be available at the conference. -- *********************************************************************** OLA'2021 International Conference on Optimization and Learning 23-25 June 2021, Catania, Italy http://ola2021.sciencesconf.org *********************************************************************** ********************************************************************** META'2021 International Conference on Metaheuristics and Nature Inspired Computing 27-30 Oct 2021, Marrakech, Morocco http://meta2021.sciencesconf.org *********************************************************************** Prof. El-ghazali TALBI Polytech'Lille, University Lille - INRIA CRISTAL - CNRS guide2research.com

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Training on Process Data Mining for Life Sciences & Health
by Marques Neves, A.R. 06 Jan '21

06 Jan '21

Helis Academy: Training on Process Data Mining for Life Sciences & Health On the 26th of January 2021, Helis Academy and TU/e will organize an online course on Process Data Mining for Life Sciences & Health. This online program provides the opportunity to get insights on theory, current practice in industry and expected possible future practice in industry within just one day, right from behind your own PC. At the end of the training, you should be able to: understand that process mining allows business to reveal the actual business rules using the history data in IT systems and compare it to pre-designed business model, and also that business models are usually created top-down while process mining uses a bottom-up approach. More information and registration is available here: https://trainingondm-helisacademy.eventbrite.nl [A picture containing text Description automatically generated] Kind regards, [Eindhoven University of Technology] Rita Neves, M.Sc. Researcher | Eindhoven University of Technology | Department of Mathematics and Computer Science M: +351 914 878 562 | +31 (0)6 838 33 047<tel:+351%20914%20878%20562%20|%20+31%20(0)6%20838%2033%20047> E: a.r.m.marques.neves(a)tue.nl<mailto:a.r.m.marques.neves@tue.nl> A: Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven [https://img.mysignature.io/s/v3/0/d/a/0da47aae-d980-5ecc-919d-f6cbbc5bd6e2.…]<https://www.linkedin.com/in/rita-neves/>

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PhD position: “Modelling the drivers of reef microbialization”
by Bas E. Dutilh 05 Jan '21

05 Jan '21

Dear Colleagues, Please forward this email to suitable candidates for a joint PhD position at Utrecht University and the Royal Netherlands Institute for Sea Research NIOZ: *“Modelling the drivers of reef microbialization”*. The ideal candidate has a MSc with a major in computational biology or metabolic modelling. See details below. *CLOSING DATE: January 20th, 2021* More info: https://www.workingatnioz.com/our-jobs/phd-position-%E2%80%9Cmodelling-the-… Apply here: https://www.workingatnioz.com/job-application.html?id=9773 All the best for 2021! Bas Dutilh and Andreas Haas THE DEPARTMENTS The Department of Earth Sciences (UU, Theoretical Biology & Bioinformatics) the UU Metagenomics Group (MGX) and the NIOZ Department of Marine Microbiology and Biogeochemistry (MMB) are looking for a highly motivated PhD candidate, a MSc with a major in computational biology or metabolic modelling. You will join two world-class research groups: the UU Metagenomics Group ( MGX <https://www.workingatnioz.com/tbb.bio.uu.nl/dutilh>) and the NIOZ Department of Marine Microbiology and Biogeochemistry (MMB <http://www.nioz.nl/en/about/organisation/staff/andi-haas>). Both UU and NIOZ are truly interdisciplinary and international institutes. UU has over 30,000 students and over 5,000 faculty and staff and is consistently ranked among the world’s top universities. UU is renowned for our emphasis on inspirational research and excellent education, and equally for the familiar atmosphere and the ambitious can-do mentality of our people. Bioinformatics is one of the Focus Areas of Utrecht University. NIOZ is a world leading marine research institute performs and promotes excellent, highly multidisciplinary research on questions relating to marine systems, addressing both scientific and societal questions. With its mission ‘Blue Planet’ NIOZ serves as the national oceanographic center in the Netherlands and serves as national marine research facilitator for the Dutch scientific community. THE PROJECT Coastal ecosystems worldwide are under threat due to increased anthropogenic pressure. Subsequent phase shifts in the marine system are characterized by alterations in the microbiome, often associated with higher abundances of copiotrophic and pathogenic bacteria. This may create a positive feedback loop that further fosters the downward trajectory of ecosystem degradation, a phenomenon called microbialization. As microbial dynamics are both cause and consequence of ecological phase shifts, they play a pivotal role in ecosystem health. As part of a recently funded collaboration project between the Royal Netherlands Institute for Sea Research (NIOZ) and Utrecht University (UU), you will combine large metabolomic and metagenomic datasets with microbial community modelling to improve our understanding of the structuring mechanisms behind microbialization and to identify potential intervention strategies. THE CANDIDATE We are looking for a highly motivated PhD candidate, a MSc with a major in computational biology or metabolic modelling. You will be using bioinformatic analysis and computational modelling to investigate the fundamental principles that shape microbiomes, as well as multi-disciplinary approaches to identify how microbial processes influence ecosystem functioning in marine and coral reef systems. Your computer and programming skills are excellent. Due to the international character of our research, good command of English, spoken as well as written, is a prerequisite. We highly encourage applicants from all members of our community and of diverse background to join us. CONDITIONS Employment of this position at Royal NIOZ is by NWO <https://www.nwo.nl/en> (The Netherlands Organization of Scientific Research). We offer a position for a period of 4 years (fulltime). We offer a position for a period of 1 year (fulltime). At the end of this first year, the employment will be extended for a fixed-term of a maximum of 4 years, if the first year evaluation held with the employee is positive. The salary is compliant to the CAO-OI <http://www.wvoi.nl/cao-oi-en/> (Collective Labour Agreement for Dutch Research Institutes), a pension scheme, a holiday allowance of 8% of the gross annual salary, a year-end bonus of 8,3%, flexible work arrangements and arrangements and 42 days of holiday leave (fulltime position). You may expect attractive secondary employment conditions. We offer generous relocation expenses for employees coming from abroad and support with finding accommodation. MORE INFORMATION For additional information about this vacancy, please contact dr. Bas E. Dutilh <b.e.dutilh(a)uu.nl> (Assistant Professor Theoretical Biology & Bioinformatics at UU) and dr. Andreas Haas <andreas.haas(a)nioz.nl> (senior scienstist at NIOZ). For additional information about the procedure, please contact Valentijn Tiemensma <valentijn.tiemensma(a)nioz.nl> (senior HR advisor). For more information about Theoretical Biology and Bioinformatics in the Department of Biology at Utrecht see here <https://www.uu.nl/en/research/theoretical-biology-and-bioinformatics>; for more information about the Department of Marine Microbiology and Biogeochemistry at NIOZ, see here <https://www.nioz.nl/en/about/mmb>. This vacancy is the result of a collaboration between Utrecht University and NIOZ. Find more information about the 13 available UU-NIOZ projects here: https://www.nioz.nl/en/research/uu-nioz-projects -- Dr. Bas E. Dutilh <http://tbb.bio.uu.nl/dutilh> Metagenomics Group <https://wiki.ubc.uu.nl/mgx/> Utrecht Bioinformatics Center <https://ubc.uu.nl/user/dutilh/> Institute of Biodynamics and Biocomplexity <http://www.ibb-uu.nl/research-groups/bas-dutilh-metagenomics-genomics/> Theoretical Biology and Bioinformatics <http://tbb.bio.uu.nl/>, Utrecht University <http://www.uu.nl/medewerkers/BEDutilh> +31 (0)30 253 4212

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PhD/postdoc position at NIOZ in collaboration with UU
by Berend Snel 05 Jan '21

05 Jan '21

Dear Colleagues, please find a link to a PhD/postdoc position to work on the evolution of metabolism in microbial eukaryotes in relation to earth's paleoclimate. https://www.workingatnioz.com/our-jobs/post-doc-or-phd-position-%E2%80%9Cto… best wishes, Berend Snel

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Phd & PostDoc position on Spatial Transcriptomics around Alzheimer's Disease
by Mark Fiers 23 Dec '20

23 Dec '20

Dear all. We have a Postdoc and PhD position in Leuven, Belgium on the use of Spatial Transcriptomics in both mouse & human applied to Alzheimer's Disease! Postdoc: https://app.jobsoid.com/App/#/Jobs/32532/Info <https://app.jobsoid.com/App/#/Jobs/32532/Info> PhD: https://app.jobsoid.com/App/#/Jobs/32541/Info <https://app.jobsoid.com/App/#/Jobs/32541/Info> For more information - please let me know - or check our recent Cell paper: https://pubmed.ncbi.nlm.nih.gov/32702314/ <https://pubmed.ncbi.nlm.nih.gov/32702314/> Bart de Strooper Mark Fiers

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BSC: Life Sciences vacancy
by BSC Human Resources 23 Dec '20

23 Dec '20

Dear all, We would like to inform you about a new job opportunitiy offered by Barcelona Supercomputing Center: - Postdoctoral researcher - Sequence-based protein coevolution (R2). Deadline: 16 February, 2021 Link here <https://www.bsc.es/join-us/job-opportunities/42720lscbr2> We would appreciate that you share the information with your contacts. Sincerely, /Human Resources/* Barcelona Supercomputing Center – Centro Nacional de Supercomputación* Tel. +34- 934137745 <mailto:anais.delastre@bsc.es>www.bsc.es <http://www.bsc.es/> http://bsc.es/disclaimer

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Doctoral Research Fellowship in machine learning for computational biology & gene regulation
by Anthony Mathelier 18 Dec '20

18 Dec '20

Dear all, Please spread to anyone who would be interested: We are looking for a PhD fellow with background in machine learning / deep learning models development ideally applied to high-throughput genomics to work with us on approaches to define cis-regulatory signatures useful for breast cancer subtype identification and to develop deep learning models to decipher the gene regulatory networks active in the identified cis-regulatory signatures. More info and application at https://www.jobbnorge.no/en/available-jobs/job/197793/doctoral-research-fel… Best AM -- Anthony Mathelier, PhD Group Leader - Computational Biology & Gene Regulation Group Centre for Molecular Medicine Norway (NCMM) Adjunct Researcher - Dept. of Medical Genetics, Oslo University Hospital http://mathelierlab.com anthony.mathelier(a)ncmm.uio.no (+47) 22840561

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