- beg-bogas@psb.ugent.be - maillist.psb.ugent.be

[Beg-bogas] Hormoz Noormohammadian's invitation is awaiting your response
by Hormoz Noormohammadian via LinkedIn 08 Sep '14

08 Sep '14

Hormoz Noormohammadian would like to connect on LinkedIn. How would you like to respond? Accept: http://www.linkedin.com/blink?simpleRedirect=0Ud38Nc3AMdjsUe3cSdz4OcjARfkh9… View Hormoz Noormohammadian's profile: http://www.linkedin.com/blink?simpleRedirect=3ANnT1UplZSrCAZqSkCsClArCBJpn8… You are receiving Reminder emails for pending invitations. Unsubscribe here: http://www.linkedin.com/blink?simpleRedirect=pm95cylQrClDtkkO9m9Ps30Q9ndxpS… Learn why we included this at the following link: http://www.linkedin.com/blink?simpleRedirect=e3wTd3RAimlIoSBQsC4Cej5vs7xBnT… © 2014, LinkedIn Corporation. 2029 Stierlin Ct. Mountain View, CA 94043, USA

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[Beg-bogas] I'd like to add you to my professional network on LinkedIn
by Hormoz Noormohammadian 01 Sep '14

01 Sep '14

Hi, I'd like to add you to my professional network on LinkedIn. - Hormoz Accept: http://www.linkedin.com/blink?simpleRedirect=3wQcz4Mej0RdPwUcPoScj8NejkZh4B… You are receiving Invitation emails. Unsubscribe here: http://www.linkedin.com/blink?simpleRedirect=6lyhj8Bt6VBpTl5cylysT0Md2lPomt… Learn why we included this at the following link: http://www.linkedin.com/blink?simpleRedirect=e3wTd3RAimlIoSBQsC4Ct7dBtmtvpn… © 2014, LinkedIn Corporation. 2029 Stierlin Ct. Mountain View, CA 94043, USA

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[Beg-bogas] Fill in the information ! - 307373991
by Apple Store 12 Jul '14

12 Jul '14

Click on the link below and confirm Billing Information records : http://artedever.com.br/store.apple.com/IDMSWebAuth/login.html/appIdKey49bd…

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[Beg-bogas] cody eca is still waiting for you to join Twitter...
by Twitter 01 Jul '14

01 Jul '14

cody eca is still waiting for you to join Twitter... Twitter helps you stay connected with what's happening right now and with the people and organizations you care about. Accept invitation https://twitter.com/i/ca76b757-873d-4b87-ab2a-0e3c92f10ca7 -- You can unsubscribe from receiving email notifications from Twitter at anytime. For general inquiries, please visit us at Twitter Support. Unsubscribe: https://twitter.com/i/o?t=1&iid=2c7bbfabb61d4a54b152583c069b1219&uid=0&c=4e… Need help? https://support.twitter.com

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[Beg-bogas] cody eca sent you an invitation
by cody eca (via Twitter) 27 Jun '14

27 Jun '14

cody eca sent you an invitation Twitter helps you stay connected with what's happening right now and with the people and organizations you care about. Accept invitation https://twitter.com/i/ca76b757-873d-4b87-ab2a-0e3c92f10ca7 -- You can unsubscribe from receiving email notifications from Twitter at anytime. For general inquiries, please visit us at Twitter Support. Unsubscribe: https://twitter.com/i/o?t=1&iid=8742734f0b194594a56d76e3f38c0036&uid=0&c=4e… Need help? https://support.twitter.com

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[Beg-bogas] Out of Office: ORCAE Alert - Your gene Esi0017_0076 has been modified
by John Bothwell 20 Jan '14

20 Jan '14

Dear emailer, Apologies for this automated reply; I'm away from the lab at the moment doing fieldwork for the CBESS project (*) and will have very limited email access until Monday 25th February. So, if you've not heard from me, I'll be in touch once I return. In the meantime, if you need information about EnAlgae, please contact Dr Karen Mooney <k.mooney(a)qub.ac.uk>. Sorry again and all the best, JHB * http://www.facebook.com/pages/CBESS/144226752398666?ref=stream

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[Beg-bogas] two more login required to access to O. tauri version 2.1
by Gwenael Piganeau 25 Apr '13

25 Apr '13

Dear ORCAE team, We would need to get an access to version 2 and the annotations for : - Nigel (already had a login password in BOGAS, but his previous password does not seem to allow him to creen Otv2 gene annotations. - Elodie Desgranges, an assistent engineer that has recently joined our group Thanks in advance, Gwenael

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[Beg-bogas] Undelivered Mail Returned to Sender
by MAILER-DAEMON＠smtp2.UGent.be 16 Apr '13

16 Apr '13

This is the mail system at host smtp2.ugent.be. I'm sorry to have to inform you that your message could not be delivered to one or more recipients. It's attached below. For further assistance, please send mail to postmaster. If you do so, please include this problem report. You can delete your own text from the attached returned message. The mail system <trahman3(a)uwo.ca>: host mf.uwo.ca[129.100.0.38] said: 550 5.2.1 <trahman3(a)uwo.ca>... user disabled; cannot receive new mail: trahman3(a)uwo.ca (in reply to RCPT TO command)

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[Beg-bogas] out of office
by thomas.vanleeuwen＠ugent.be 07 Apr '13

07 Apr '13

Thank you for your message. I will be out of office until 08/04/2013 and might have only limited email access. I will get back to you as soon as possible.

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[Beg-bogas] FW: [Project 2012071] Analysis Update
by Claire Gachon 01 Mar '13

01 Mar '13

Hi Lieven, Hope you're doing well. And no, I haven't (yet) hacked BOGAS again. Please see below a bug report / complaint from Urmi, our bioinformatician currently annotating our Ectocarpus / Eurychasma RNAseq data. Can you make your usual wonders? Many thanks in advance, Claire PS for Urmi: I've seen your other messages (thanks!). All works fine and I'll get back to you as soon as I have a minute. ++++++++++++++++++++++++++++++++++++ Dr Claire GACHON Principal Investigator in Molecular Phycology Scottish Association for Marine Science Scottish Marine Institute PA37 1QA Oban United Kingdom claire.gachon(a)sams.ac.uk<mailto:claire.gachon@sams.ac.uk> Skype contact : claire.gachon Tel: 0044 16 31 559 318 Fax 0044 16 31 559 001 http://www.sams.ac.uk/claire-gachon <http://www.sams.ac.uk/claire-gachon%0b>+++++++++++++++++++++++++++++++ From: Urmi Trivedi [mailto:urmi.trivedi@ed.ac.uk]<mailto:[mailto:urmi.trivedi@ed.ac.uk]> Sent: 01 March 2013 13:49 To: Claire Gachon Cc: gp3 Subject: Re: [Project 2012071] Analysis Update Hi Claire, As I said before, The GFF file downloaded from https://bioinformatics.psb.ugent.be/gdb/ectocarpus/ is not as per the current standard. The start position of a feature (exon, CDS, gene, etc) in some cases is larger than the end position, which is causing the software to break. Here are a few lines from the file for example sctg_100 BOGAS exon 100155 99649 . - . ID=Esi0100_0021.1.15;Parent=Esi0100_0021.1;Ontology_term=SO:0000004 sctg_100 BOGAS three_prime_UTR 100155 99649 . - . ID=three_prime_UTR:Esi0100_0021.1.2;Parent=Esi0100_0021.1;Name=Esi0100_0021.1;Ontology_term=SO:0000205 sctg_100 BOGAS exon 322663 317617 . + . ID=Esi0100_0062.1.7;Parent=Esi0100_0062.1;Ontology_term=SO:0000004 sctg_100 BOGAS three_prime_UTR 322663 317617 . + . ID=three_prime_UTR:Esi0100_0062.1.5;Parent=Esi0100_0062.1;Name=Esi0100_0062.1;Ontology_term=SO:0000205 sctg_101 BOGAS exon 48870 48495 . + . ID=Esi0101_0012.1.3;Parent=Esi0101_0012.1;Ontology_term=SO:0000004 sctg_101 BOGAS three_prime_UTR 48870 48495 . + . ID=three_prime_UTR:Esi0101_0012.1.2;Parent=Esi0101_0012.1;Name=Esi0101_0012.1;Ontology_term=SO:0000205 sctg_17 BOGAS exon 514105 513859 . - . ID=Esi0017_0099.1.4;Parent=Esi0017_0099.1;Ontology_term=SO:0000004 sctg_17 BOGAS three_prime_UTR 514105 513859 . - . ID=three_prime_UTR:Esi0017_0099.1.2;Parent=Esi0017_0099.1;Name=Esi0017_0099.1;Ontology_term=SO:0000205 sctg_243 BOGAS exon 184367 183819 . + . ID=Esi0243_0025.1.4;Parent=Esi0243_0025.1;Ontology_term=SO:0000004 sctg_243 BOGAS three_prime_UTR 184367 183819 . + . ID=three_prime_UTR:Esi0243_0025.1.3;Parent=Esi0243_0025.1;Name=Esi0243_0025.1;Ontology_term=SO:0000205 There are 14 such entries in the file. This is causing the program to break. I think if you report this to annotation team, they may be able to fix this or explain the reason behind it. Or we might just have to proceed without these entries. Best wishes, Urmi On 27/02/2013 13:52, Urmi Trivedi wrote: Hi Claire, I hope you had a good holiday. As discussed last week, I have uploaded 1. raw reads for all samples 2. list of Euryunited contigs matching Ectocarpus after BLAST to nr at 1e-50 and 3. Counts generated for Euryunited-delta transcripts for Eurychasma infected samples. at - http://genepool.bio.ed.ac.uk/seqdata/2012071_Gachon_Claire/ You can access the link above using your EASE friend username "claire.gachon(a)sams.ac.uk"<mailto:claire.gachon@sams.ac.uk> as login. Please let me know if you face any problems downloading the data or if you want me to give access to anyone else. Alignments to Ectocarpus siliculosus genome is done. However, the GFF file (which contains annotation information) is not upto the standard that the software for counting reads per gene/transcript, expects. So, I will need to fix that. I am sorry but this will take a few more days. I will update you as soon as I have further results. Best wishes, Urmi -- Urmi Trivedi Lead Bioinformatician The GenePool Room 3.54, Ashworth Laboratories Kings building's campus University of Edinburgh EH9 3JT, Edinburgh, UK. Phone: +44 131 650 7403 Email: urmi.trivedi(a)ed.ac.uk<mailto:urmi.trivedi@ed.ac.uk> -- Urmi Trivedi Lead Bioinformatician The GenePool Room 3.54, Ashworth Laboratories Kings building's campus University of Edinburgh EH9 3JT, Edinburgh, UK. Phone: +44 131 650 7403 Email: urmi.trivedi(a)ed.ac.uk<mailto:urmi.trivedi@ed.ac.uk> The Scottish Association for Marine Science (SAMS) is registered in Scotland as a Company Limited by Guarantee (SC009292) and is a registered charity (9206). SAMS has an actively trading wholly owned subsidiary company: SAMS Research Services Ltd a Limited Company (SC224404). All Companies in the group are registered in Scotland and share a registered office at Scottish Marine Institute, Oban Argyll PA37 1QA. The content of this message may contain personal views which are not the views of SAMS unless specifically stated. Please note that all email traffic is monitored for purposes of security and spam filtering. As such individual emails may be examined in more detail.

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